Here is a list of all class members with links to the classes they belong to:
- g -
- ga
: dp_matrix
- gapExtn
: BioDnaSequenceAlignment
, BioProteinSequenceAlignment
- gapPenalty
: BioDnaSequenceAlignment
, BioProteinSequenceAlignment
- gb
: dp_matrix
- get3PrimeClip()
: BioFeatures
- get3PrimeSiteValue()
: BioFTQConsSplice
- get3PrimeUtr()
: BioFeatures
- get5PrimeClip()
: BioFeatures
- get5PrimeSiteValue()
: BioFTQConsSplice
- get5PrimeUtr()
: BioFeatures
- get_()
: BioFeatures
- get_10Signal()
: BioFeatures
- get_35Signal()
: BioFeatures
- get_a()
: BioHkl
- get_a_star()
: BioHkl
- get_alpha()
: BioHkl
- get_alpha_star()
: BioHkl
- get_b()
: BioHkl
- get_b_star()
: BioHkl
- get_beta()
: BioHkl
- get_beta_star()
: BioHkl
- get_c()
: BioHkl
- get_c_star()
: BioHkl
- get_gamma()
: BioHkl
- get_gamma_star()
: BioHkl
- get_h()
: BioHkl
- get_k()
: BioHkl
- get_l()
: BioHkl
- getA()
: BioPdbCryst1
, BioEmblSq
- getAb()
: BioPubmedAb
- getAccessibleSurfaceArea()
: BioAminoAcid
- getAccession()
: BioGenBankAccession
- getAccessionNumber()
: BioFTQUsedIn
, BioGenBankVersion
, BioRestrictionEnzymeLibrary
- getAccValMov()
: BioDnaSequenceAlignment
, BioProteinSequenceAlignment
, BioDnaSequenceAlignment
, BioProteinSequenceAlignment
, BioDnaSequenceAlignment
, BioProteinSequenceAlignment
, BioDnaSequenceAlignment
, BioProteinSequenceAlignment
, BioDnaSequenceAlignment
, BioProteinSequenceAlignment
- getActSite()
: BioSwissProtFt
- getAd()
: BioPubmedAd
- getAdjacencyMatrix()
: BioGraph
- getAid()
: BioPubmedAid
, BioPubmedSingleAid
- getAlias()
: BioPsiTabInteractor
- getAlignedFragmentLength()
: BioSingleBlast
- getAlignedRepeat()
: BioDnaMultiPatternAlignment
, BioProteinMultiPatternAlignment
, BioDnaSequenceRepeatAlignment
, BioProteinSequenceRepeatAlignment
- getAlignedSequence()
: BioMultipleSequenceAlignment
- getAlignedSequence1()
: BioProteinSequenceLocalAlignment
, BioDnaSequenceOverlapAlignment
, BioDnaSequenceRepeatAlignment
, BioProteinSequenceRepeatAlignment
, BioDnaSequenceGlobalAlignment
, BioProteinSequenceGlobalAlignment
, BioDnaSequenceLocalAlignment
- getAlignedSequence2()
: BioDnaSequenceGlobalAlignment
, BioProteinSequenceGlobalAlignment
, BioDnaSequenceLocalAlignment
, BioProteinSequenceLocalAlignment
, BioDnaSequenceOverlapAlignment
, BioDnaSequenceRepeatAlignment
, BioProteinSequenceRepeatAlignment
- getAlignedSequenceInFasta()
: BioMultipleSequenceAlignment
- getAlignedSequenceName()
: BioMultipleSequenceAlignment
- getAlignedSequences()
: BioMultipleSequenceAlignment
- getAlignedSequencesInMultipleFasta()
: BioMultipleSequenceAlignment
- getAlignment()
: BioBlast
, BioSingleBlast
- getAllele()
: BioFTQAllele
- getAllNullProbeIndexList()
: BioDataSet
- getAllNullSampleIndexList()
: BioDataSet
- getAlpha()
: BioPdbCryst1
- getAlternateId()
: BioPsiTabInteractor
- getAmbigousRestrictionEnzymes()
: BioRestrictionEnzymeLibrary
- getAminoAcid()
: BioAminoAcidLibrary
, BioProteinSequence
- getAminoAcidName()
: BioAminoAcid
- getAminoAcidPosition()
: BioProteinSubstitutionMatrix
- getAntiCodonAminoAcid()
: BioFTQAntiCodon
- getAtcc()
: BioPdbSingleSource
- getAtom()
: BioResidue
- getAtomicMass()
: BioElement
- getAtomicNumber()
: BioElement
- getAtomicRadius()
: BioElement
- getAtomicScatteringFactor()
: BioElement
- getAtomIndex()
: BioResidue
- getAtomName()
: BioAtom
- getAtomNumber()
: BioAtom
- getAtomRecord()
: BioAtom
- getAttenuator()
: BioFeatures
- getAu()
: BioPubmedAu
, BioPubmedSingleAu
- getAuthorName()
: BioPsiTabInteractionLiteratureReference
- getAverageAccessibleArea()
: BioAminoAcid
- getAverageBfactor()
: BioChain
- getAverageBuriedArea()
: BioAminoAcid
- getAverageClusteringCoefficient()
: BioGraph
- getAverageOfProbeSets()
: BioDataSet
- getAverageOfSampleSets()
: BioDataSet
- getB()
: BioPdbCryst1
- getBase()
: BioFTLSingleBase
, BioDnaSequence
- getBasePosition()
: BioFTLSingleBase
- getBaseRange()
: BioFTLBaseRange
- getBeta()
: BioPdbCryst1
- getBfactor()
: BioAtom
- getBinding()
: BioSwissProtFt
- getBiologicalUnit()
: BioPdbSingleCompnd
- getBoundMoiety()
: BioFTQBoundMoiety
- getBraggAngle()
: BioHkl
- getC()
: BioEmblSq
, BioPdbCryst1
- getCAATSignal()
: BioFeatures
- getCaBind()
: BioSwissProtFt
- getCAlphaRmsd()
: BioProteinStructureAlignment
- getCarbohyd()
: BioSwissProtFt
- getCc()
: BioEmblCc
- getCcAllergen()
: BioSwissProtCc
, BioSwissProtCcAllergen
- getCcAlternativeProducts()
: BioSwissProtCc
- getCcBioTechnology()
: BioSwissProtCc
, BioSwissProtCcBioTechnology
- getCcCatalyticActivity()
: BioSwissProtCc
, BioSwissProtCcCatalyticActivity
- getCcCaution()
: BioSwissProtCc
, BioSwissProtCcCaution
- getCcCoFactor()
: BioSwissProtCc
, BioSwissProtCcCoFactor
- getCcComment()
: BioSwissProtCcAlternativeProducts
- getCcDatabase()
: BioSwissProtCc
- getCcDatabaseFTP()
: BioSwissProtCcDatabase
- getCcDatabaseName()
: BioSwissProtCcDatabase
- getCcDatabaseNote()
: BioSwissProtCcDatabase
- getCcDatabaseWWW()
: BioSwissProtCcDatabase
- getCcDevelopmentalStage()
: BioSwissProtCc
, BioSwissProtCcDevelopmentalStage
- getCcDisease()
: BioSwissProtCc
, BioSwissProtCcDisease
- getCcDomain()
: BioSwissProtCc
, BioSwissProtCcDomain
- getCcEnzymeRegulation()
: BioSwissProtCc
, BioSwissProtCcEnzymeRegulation
- getCcEvent()
: BioSwissProtCcAlternativeProducts
- getCcFunction()
: BioSwissProtCc
, BioSwissProtCcFunction
- getCcInduction()
: BioSwissProtCc
, BioSwissProtCcInduction
- getCcIsoId()
: BioSwissProtCcAlternativeProducts
- getCcMassSpectrometry()
: BioSwissProtCc
- getCcMassSpectrometryMethod()
: BioSwissProtCcMassSpectrometry
- getCcMassSpectrometryMW()
: BioSwissProtCcMassSpectrometry
- getCcMassSpectrometryMW_ERR()
: BioSwissProtCcMassSpectrometry
- getCcMassSpectrometryRange()
: BioSwissProtCcMassSpectrometry
- getCcMiscellaneous()
: BioSwissProtCc
, BioSwissProtCcMiscellaneous
- getCcName()
: BioSwissProtCcAlternativeProducts
- getCcNamedIsoforms()
: BioSwissProtCcAlternativeProducts
- getCcNote()
: BioSwissProtCcAlternativeProducts
- getCcNumberOfIsoIds()
: BioSwissProtCcAlternativeProducts
- getCcNumberOfNames()
: BioSwissProtCcAlternativeProducts
- getCcNumberOfNotes()
: BioSwissProtCcAlternativeProducts
- getCcNumberOfSequences()
: BioSwissProtCcAlternativeProducts
- getCcNumberOfSynonyms()
: BioSwissProtCcAlternativeProducts
- getCcPathWay()
: BioSwissProtCc
, BioSwissProtCcPathWay
- getCcPharmaceutical()
: BioSwissProtCc
, BioSwissProtCcPharmaceutical
- getCcPolymorphism()
: BioSwissProtCc
, BioSwissProtCcPolymorphism
- getCcPtm()
: BioSwissProtCc
, BioSwissProtCcPtm
- getCcRnaEditing()
: BioSwissProtCc
, BioSwissProtCcRnaEditing
- getCcSequence()
: BioSwissProtCcAlternativeProducts
- getCcSimilarity()
: BioSwissProtCc
, BioSwissProtCcSimilarity
- getCcSubCellularLocation()
: BioSwissProtCc
, BioSwissProtCcSubCellularLocation
- getCcSubUnit()
: BioSwissProtCc
, BioSwissProtCcSubUnit
- getCcSynonyms()
: BioSwissProtCcAlternativeProducts
- getCcTissueSpecificity()
: BioSwissProtCc
, BioSwissProtCcTissueSpecificity
- getCds()
: BioFeatures
- getCell()
: BioPdbSingleSource
- getCellLine()
: BioFTQCellLine
, BioPdbSingleSource
- getCellType()
: BioFTQCellType
- getCellularLocation()
: BioPdbSingleSource
- getCentroid()
: BioChain
, BioResidue
- getCFHelixPropensity()
: BioAminoAcid
- getCFSheetPropensity()
: BioAminoAcid
- getCFTurnPositionProbability()
: BioAminoAcid
- getCFTurnPropensity()
: BioAminoAcid
- getChain()
: BioPdbSingleCompnd
, BioSwissProtFt
- getChainId()
: BioChain
, BioWater
- getChainSegment()
: BioChain
, BioProteinChain
- getChromosome()
: BioFTQChromosome
- getCi()
: BioPubmedCi
- getCitation()
: BioFTQCitation
, BioEst
- getClass()
: BioScop171
- getClassId()
: BioScopClass
- getClassification()
: BioPdbHeader
- getCleanDataSet()
: BioDataSet
- getCleanProbeIndexList()
: BioDataSet
- getCleanSampleIndexList()
: BioDataSet
- getClone()
: BioFTQClone
, BioEst
- getCloneLib()
: BioFTQCloneLib
- getClusteringCoefficient()
: BioGraph
- getCo()
: BioEmblCo
- getCodonAminoAcid()
: BioFTQCodon
- getCodonSequence()
: BioFTQCodon
- getCodonStart()
: BioFTQCodonStart
- getColumn()
: BioMultipleSequenceAlignment
, BioClustal
, BioEst
- getColumnScore()
: BioMultipleSequenceAlignment
, BioProteinMultipleSequenceAlignment
- getColumnScores()
: BioMultipleSequenceAlignment
, BioProteinMultipleSequenceAlignment
- getColumnSocre()
: BioDnaMultipleSequenceAlignment
- getColumnSocres()
: BioDnaMultipleSequenceAlignment
- getComment()
: BioEst
, BioPdbHelix
, BioPdbTurn
- getComments()
: BioGde
- getCompare()
: BioFTQCompare
- getCompareAccessionNumber()
: BioFTQCompare
- getCompareSequenceVersion()
: BioFTQCompare
- getComplementaryBase()
: BioNucleicAcid
- getComplementarySequence()
: BioDnaSequence
- getCompnd()
: BioPdbCompnd
- getCompoundAccessionNumber()
: BioFTLSingleBaseRange
, BioEmblSv
, BioGenBankVersion
- getConfidenceScore()
: BioPsiTabInteraction
, BioPsiTabInteractionConfidenceScore
- getConfidenceScoreType()
: BioPsiTabInteractionConfidenceScore
- getConflict()
: BioFeatures
, BioSwissProtFt
- getConsensusSequence()
: BioProteinSequenceGlobalAlignment
- getConservedColumnPositions()
: BioClustal
- getContName()
: BioEst
- getControlProbeIndexList()
: BioDataSet
- getCorrelationCoefficient()
: BioStatistics
- getCountry()
: BioFTQCountry
- getCreatedDate()
: BioSwissProtDt
- getCreationDate()
: BioGde
- getCreator()
: BioGde
- getCRegion()
: BioFeatures
- getCrossLnk()
: BioSwissProtFt
- getCultivar()
: BioFTQCultivar
- getCurrentDirectory()
: BioDatabase
- getCutSite()
: BioRestrictionEnzymeLibrary
- getDa()
: BioPubmedDa
- getData()
: BioData
- getDatabaseAccession()
: BioPdbDbref
- getDatabaseEndingResidueNumber()
: BioPdbDbref
- getDatabaseId()
: BioPsiTabInteractionDetectionMethod
, BioPsiTabInteractionType
- getDatabaseIdentifier()
: BioPdbDbref
- getDatabaseInitialResidueNumber()
: BioPdbDbref
- getDatabaseName()
: BioBlast
, BioPsiTabInteractionDetectionMethod
, BioPsiTabInteractionLiteratureReference
, BioPsiTabInteractionType
, BioPsiTabInteractorAlias
, BioPsiTabInteractorTaxonId
- getDataBaseName()
: BioEmblSingleDr
, BioSwissProtSingleDr
- getDataSetExcludingControlProbes()
: BioDataSet
- getDataStatus()
: BioEmblId
, BioSwissProtId
- getDay()
: BioTime
- getDb()
: BioFTQSingleDbXref
- getDbLastUpdate()
: BioUrl
- getDbName()
: BioFTQUsedIn
- getDbref()
: BioPdbDbref
- getDbXref()
: BioFTQDbXref
- getDcom()
: BioPubmedDcom
- getDe()
: BioEmblDe
, BioSwissProtDe
- getDefinition()
: BioGenBankDefinition
- getDeletedSequence()
: BioSequence
- getDep()
: BioPubmedDep
- getDepositedDate()
: BioEmblDt
, BioGenBankLocus
, BioPdbHeader
- getDepositedDay()
: BioGenBankLocus
, BioPdbHeader
- getDepositedMonth()
: BioGenBankLocus
, BioPdbHeader
- getDepositedYear()
: BioGenBankLocus
, BioPdbHeader
- getDescription()
: BioGde
, BioScopClass
, BioScopDomainEntry
, BioScopFamily
, BioScopFold
, BioScopProteinDomain
, BioScopSpecies
, BioScopSuperFamily
, BioSwptFTKSingleActSite
, BioSwptFTKSingleBinding
, BioSwptFTKSingleCaBind
, BioSwptFTKSingleCarbohyd
, BioSwptFTKSingleChain
, BioSwptFTKSingleConflict
, BioSwptFTKSingleCrossLnk
, BioSwptFTKSingleDiSulfid
, BioSwptFTKSingleDnaBind
, BioSwptFTKSingleDomain
, BioSwptFTKSingleHelix
, BioSwptFTKSingleInitMet
, BioSwptFTKSingleLipid
, BioSwptFTKSingleMetal
, BioSwptFTKSingleModRes
, BioSwptFTKSingleMutagen
, BioSwptFTKSingleNonCons
, BioSwptFTKSingleNonTer
, BioSwptFTKSingleNpBind
, BioSwptFTKSinglePeptide
, BioSwptFTKSinglePropep
, BioSwptFTKSingleRepeat
, BioSwptFTKSingleSeCys
, BioSwptFTKSingleSignal
, BioSwptFTKSingleSite
, BioSwptFTKSingleStrand
, BioSwptFTKSingleTransit
, BioSwptFTKSingleTransMem
, BioSwptFTKSingleTurn
, BioSwptFTKSingleUnsure
, BioSwptFTKSingleVariant
, BioSwptFTKSingleVarSplic
, BioSwptFTKSingleZnFing
- getDetectionMethod()
: BioPsiTabInteraction
- getDevStage()
: BioFTQDevStage
- getDirection()
: BioFTQDirection
, BioGde
- getDisorder()
: BioProteinDisorderPrediction
- getDisorderedResiduePositions()
: BioProteinDisorderPrediction
- getDistance()
: BioChain
, BioPoint
, BioResidue
- getDiSulfid()
: BioSwissProtFt
- getDivisionCode()
: BioEmblId
, BioGenBankLocus
- getDLoop()
: BioFeatures
- getDnaBind()
: BioSwissProtFt
- getDnaType()
: BioEst
- getDoi()
: BioSwissProtRx
- getDomain()
: BioSwissProtFt
- getDomainEntry()
: BioScopSpecies
- getDoubleXDataSet()
: BioData
- getDp()
: BioPubmedDp
- getDr()
: BioSwissProtDr
- getDSegment()
: BioFeatures
- getDuplicateChainIndices()
: BioProtein
- getEc()
: BioPdbSingleCompnd
- getECNumber()
: BioFTQECNumber
- getEcotype()
: BioFTQEcotype
- getEdat()
: BioPubmedEdat
- getElement()
: BioElementLibrary
- getElementCode()
: BioElement
- getElementName()
: BioElement
- getEmblFile()
: BioUrl
- getEndingBasePosition()
: BioFTLSingleBaseRange
- getEndingChainId()
: BioPdbHelix
, BioPdbStrand
, BioPdbTurn
- getEndingPosition()
: BioSwptFTKSingleActSite
, BioSwptFTKSingleBinding
, BioSwptFTKSingleCaBind
, BioSwptFTKSingleCarbohyd
, BioSwptFTKSingleChain
, BioSwptFTKSingleConflict
, BioSwptFTKSingleCrossLnk
, BioSwptFTKSingleDiSulfid
, BioSwptFTKSingleDnaBind
, BioSwptFTKSingleDomain
, BioSwptFTKSingleHelix
, BioSwptFTKSingleInitMet
, BioSwptFTKSingleLipid
, BioSwptFTKSingleMetal
, BioSwptFTKSingleModRes
, BioSwptFTKSingleMutagen
, BioSwptFTKSingleNonCons
, BioSwptFTKSingleNonTer
, BioSwptFTKSingleNpBind
, BioSwptFTKSinglePeptide
, BioSwptFTKSinglePropep
, BioSwptFTKSingleRepeat
, BioSwptFTKSingleSeCys
, BioSwptFTKSingleSignal
, BioSwptFTKSingleSite
, BioSwptFTKSingleStrand
, BioSwptFTKSingleTransit
, BioSwptFTKSingleTransMem
, BioSwptFTKSingleTurn
, BioSwptFTKSingleUnsure
, BioSwptFTKSingleVariant
, BioSwptFTKSingleVarSplic
, BioSwptFTKSingleZnFing
- getEndingResidueName()
: BioPdbHelix
, BioPdbStrand
, BioPdbTurn
- getEndingResidueNumber()
: BioPdbDbref
, BioPdbHelix
, BioPdbStrand
, BioPdbTurn
- getEngineered()
: BioPdbSingleCompnd
- getEnhancer()
: BioFeatures
- getEntriesByGene()
: BioMultipleEmbl
, BioMultipleGenBank
- getEntriesByGenomes()
: BioMultipleEmbl
, BioMultipleGenBank
- getEntriesByOrganism()
: BioMultipleGenBank
, BioMultipleSwissProt
- getEntriesByProtein()
: BioMultipleSwissProt
- getEntry()
: BioMultipleEmbl
, BioMultipleFasta
, BioMultipleGenBank
, BioMultiplePubmed
, BioMultipleSwissProt
, BioMultipleSequences
- getEntryName()
: BioEmblId
, BioGenBankLocus
, BioSwissProtId
- getEnzymeName()
: BioRestrictionEnzymeLibrary
- getEnzymeType()
: BioRestrictionEnzymeLibrary
- getError()
: BioEst
- getEstimatedLength()
: BioFTQEstimatedLength
- getEstNumber()
: BioEst
- getEValue()
: BioSingleBlast
- getEvidence()
: BioFTQEvidence
- getException()
: BioFTQException
- getExon()
: BioFeatures
- getExpdta()
: BioPdbExpdta
- getExpdtaSize()
: BioPdbExpdta
- getExpressionSystem()
: BioPdbSingleSource
- getExpressionSystemAtccNumber()
: BioPdbSingleSource
- getExpressionSystemCell()
: BioPdbSingleSource
- getExpressionSystemCellLine()
: BioPdbSingleSource
- getExpressionSystemCellularLocation()
: BioPdbSingleSource
- getExpressionSystemCommon()
: BioPdbSingleSource
- getExpressionSystemGene()
: BioPdbSingleSource
- getExpressionSystemOrgan()
: BioPdbSingleSource
- getExpressionSystemOrganelle()
: BioPdbSingleSource
- getExpressionSystemPlasmid()
: BioPdbSingleSource
- getExpressionSystemStrain()
: BioPdbSingleSource
- getExpressionSystemTissue()
: BioPdbSingleSource
- getExpressionSystemVariant()
: BioPdbSingleSource
- getExpressionSystemVector()
: BioPdbSingleSource
- getExpressionSystemVectorType()
: BioPdbSingleSource
- getExtinctionCoefficient()
: BioProteinSequence
- getFamily()
: BioScopSuperFamily
- getFamilyId()
: BioScopFamily
- getFau()
: BioPubmedFau
, BioPubmedSingleFau
- getFile()
: BioDatabase
- getFileByFtp()
: BioUrl
- getFileIndex()
: BioDatabase
- getFileWithFullPath()
: BioDatabase
- getFinalBasePosition()
: BioFTQAntiCodon
, BioFTQTranslExcept
- getFObs()
: BioHkl
- getFold()
: BioScopClass
- getFoldId()
: BioScopFold
- getFragment()
: BioPdbSingleCompnd
, BioPdbSingleSource
- getFrequency()
: BioFTQFrequency
- getFSigma()
: BioHkl
- getFunction()
: BioFTQFunction
- getG()
: BioEmblSq
- getGamma()
: BioPdbCryst1
- getGap()
: BioFeatures
- getGCSignal()
: BioFeatures
- getGenBankFile()
: BioUrl
- getGene()
: BioFeatures
, BioFTQGene
, BioPdbSingleSource
- getGeneAccession()
: BioUrl
- getGeneId()
: BioUrl
- getGeneSynonyms()
: BioUrl
- getGenPeptFile()
: BioUrl
- getGlobalSequenceIdentity()
: BioProteinStructureAlignment
- getGoComponent()
: BioFTQNote
- getGoFunction()
: BioFTQNote
- getGoProcess()
: BioFTQNote
- getGr()
: BioPubmedGr
, BioPubmedSingleGr
- getGroupID()
: BioGde
- getGXGSurfaceArea()
: BioAminoAcid
- getHaplotype()
: BioFTQHaplotype
- getHeight()
: BioPostScript
- getHelix()
: BioProteinSecondaryStructurePrediction
, BioSecondaryStructure
, BioSwissProtFt
- getHelixClass()
: BioPdbHelix
- getHelixCoordinates()
: BioPdbHelix
- getHelixDirectionCosines()
: BioPdbHelix
, BioSecondaryStructure
- getHelixId()
: BioPdbHelix
- getHelixIdIndex()
: BioSecondaryStructure
- getHelixLength()
: BioPdb
, BioPdbHelix
- getHelixSequence()
: BioPdbHelix
, BioSecondaryStructure
- getHelixSerialNumber()
: BioPdbHelix
- getHiqualStart()
: BioEst
- getHiqualStop()
: BioEst
- getHours()
: BioTime
- getHydropathyIndex()
: BioAminoAcid
- getHydrophilicity()
: BioAminoAcid
- getHydrophobicity()
: BioAminoAcid
- getId()
: BioPsiTabDbref
, BioPsiTabInteractorTaxonId
- getIdBasePairs()
: BioEmblId
- getIdentifier()
: BioFTQSingleDbXref
- getIdentity()
: BioDnaSequenceGlobalAlignment
, BioProteinSequenceGlobalAlignment
, BioDnaSequenceLocalAlignment
, BioProteinSequenceLocalAlignment
, BioDnaSequenceOverlapAlignment
, BioDnaSequenceRepeatAlignment
, BioProteinSequenceRepeatAlignment
, BioProteinSecondaryStructureAlignment
- getIDna()
: BioFeatures
- getInitialBasePosition()
: BioFTQAntiCodon
, BioFTQTranslExcept
- getInitialChainId()
: BioPdbHelix
, BioPdbStrand
, BioPdbTurn
- getInitialResidueName()
: BioPdbHelix
, BioPdbStrand
, BioPdbTurn
- getInitialResidueNumber()
: BioPdbDbref
, BioPdbHelix
, BioPdbStrand
, BioPdbTurn
- getInitialStateProbabilities()
: BioHmm
- getInitMet()
: BioSwissProtFt
- getInsert()
: BioEst
- getInsertedSequence()
: BioSequence
- getInsertionSeq()
: BioFTQInsertionSeq
- getInteraction()
: BioPsimiTab
- getInteractionDbId()
: BioPsiTabInteractionSourceDb
- getInteractionDbName()
: BioPsiTabInteractionSourceDb
- getInteractionType()
: BioPsiTabInteraction
, BioSifInteraction
- getInteractorA()
: BioPsiTabInteraction
, BioSifInteraction
- getInteractorAlias()
: BioPsiTabInteractor
- getInteractorAlternateId()
: BioPsiTabInteractor
- getInteractorB()
: BioPsiTabInteraction
, BioSifInteraction
- getInteractorTaxonId()
: BioPsiTabInteractor
- getInteractorUniqueId()
: BioPsiTabInteractor
- getIntron()
: BioFeatures
- getIObs()
: BioHkl
- getIp()
: BioPubmedIp
- getIs()
: BioPubmedIs
- getISigma()
: BioHkl
- getIsolate()
: BioFTQIsolate
- getIsolationSource()
: BioFTQIsolationSource
- getJid()
: BioPubmedJid
- getJSegment()
: BioFeatures
- getKeywdsSize()
: BioPdbKeywds
- getKeywordsSize()
: BioGenBankKeywords
- getKw()
: BioSwissProtKw
- getLa()
: BioPubmedLa
- getLabel()
: BioFTQLabel
- getLabHost()
: BioFTQLabHost
- getLambda()
: BioHkl
- getLastAnnotationUpdate()
: BioSwissProtDt
- getLastAtom()
: BioResidue
- getLastAtomName()
: BioResidue
- getLastAtomNumber()
: BioResidue
- getLastChain()
: BioProtein
- getLastChainId()
: BioProtein
- getLastResidue()
: BioChain
- getLastResidueName()
: BioChain
- getLastResidueNumber()
: BioChain
- getLastSequenceUpdate()
: BioSwissProtDt
- getLastUpdatedDate()
: BioEmblDt
- getLibrary()
: BioEst
- getLipid()
: BioSwissProtFt
- getLiteractureReference()
: BioPsiTabInteraction
- getLocalSequenceIdentity()
: BioProteinStructureAlignment
- getLocusName()
: BioEmblId
, BioGenBankLocus
- getLocusTag()
: BioFTQLocusTag
- getLongName()
: BioGde
- getLowerBoundBasePosition()
: BioFTLSingleBase
, BioFTLSingleSite
- getLowerBoundEndingBasePosition()
: BioFTLSingleBaseRange
- getLowerBoundStartingBasePosition()
: BioFTLSingleBaseRange
- getLr()
: BioPubmedLr
- getLtr()
: BioFeatures
- getMainChainRmsd()
: BioProteinStructureAlignment
- getMap()
: BioFTQMap
- getMatchColumnPositions()
: BioClustal
- getMatPeptide()
: BioFeatures
- getMaximum()
: BioDataSet
, BioProbeSet
, BioSampleSet
, BioStatistics
- getMaximumOfYDataSets()
: BioData
- getMean()
: BioDataSet
, BioProbeSet
, BioSampleSet
, BioStatistics
- getMeanFractionalAreaLoss()
: BioAminoAcid
- getMedian()
: BioDataSet
, BioProbeSet
, BioSampleSet
, BioStatistics
- getMedLineId()
: BioEmblRx
, BioSwissProtRx
- getMetal()
: BioSwissProtFt
- getMethodName()
: BioPsiTabInteractionDetectionMethod
- getMethylationBase()
: BioRestrictionEnzymeLibrary
- getMethylationSite()
: BioRestrictionEnzymeLibrary
- getMethylationType()
: BioRestrictionEnzymeLibrary
- getMh()
: BioPubmedMh
, BioPubmedSingleMh
- getMhda()
: BioPubmedMhda
- getMinimum()
: BioDataSet
, BioProbeSet
, BioSampleSet
, BioStatistics
- getMinimumOfYDataSets()
: BioData
- getMinutes()
: BioTime
- getMiscBinding()
: BioFeatures
- getMiscDifference()
: BioFeatures
- getMiscFeature()
: BioFeatures
- getMiscRecomb()
: BioFeatures
- getMiscRna()
: BioFeatures
- getMiscSignal()
: BioFeatures
- getMiscStructure()
: BioFeatures
- getMissingResidue()
: BioPdbRemark465
- getMissingResiduePosition()
: BioPdbRemark465
- getMissingResiduePositions()
: BioPdbRemark465
- getMissingResidues()
: BioPdbRemark465
- getModBase()
: BioFTQModBase
- getModifiedBase()
: BioFeatures
- getModifiedResidueComment()
: BioPdbModres
- getModifiedResidueName()
: BioPdbModres
- getModifiedResidueNames()
: BioPdbModres
- getModifiedResiduePosition()
: BioPdbModres
- getModifiedResiduePositions()
: BioPdbModres
- getModRes()
: BioSwissProtFt
- getMolarExtinctionCoefficient()
: BioProteinSequence
- getMolecularVolume()
: BioAminoAcid
- getMolecularWeight()
: BioSwissProtSq
, BioAminoAcid
, BioNucleicAcid
, BioDnaSequence
, BioProteinSequence
- getMolecule()
: BioPdbSingleCompnd
- getMoleculeName()
: BioEmblId
, BioGenBankLocus
- getMolId()
: BioPdbSingleCompnd
, BioPdbSingleSource
- getMolType()
: BioFTQMolType
- getMonth()
: BioTime
- getMRna()
: BioFeatures
- getmRnaBase()
: BioNucleicAcid
- getmRnaSequence()
: BioDnaSequence
- getMultipleProbeSets()
: BioDataSet
- getMultipleSampleSets()
: BioDataSet
- getMutagen()
: BioSwissProtFt
- getMutatedSequence()
: BioSequence
- getMutation()
: BioPdbSingleCompnd
- getName()
: BioGde
, BioPsiTabDbref
, BioPsiTabInteractorAlias
- getNcbiGiIdentifier()
: BioGenBankVersion
- getNcbiIdentifier()
: BioEmblSv
- getNcbiTaxanomyId()
: BioSwissProtOx
- getNeighborNodeIds()
: BioGraph
- getNodeDistance()
: BioGraph
- getNodeDistances()
: BioGraph
- getNodeId()
: BioGraph
- getNodeIdIndex()
: BioGraph
- getNodeIds()
: BioGraph
- getNonCons()
: BioSwissProtFt
- getNonTer()
: BioSwissProtFt
- getNormalizedBfactors()
: BioChain
- getNormalizedDataSet()
: BioDataSet
, BioStatistics
- getNormalizedProbeSet()
: BioProbeSet
- getNormalizedSampleSet()
: BioSampleSet
- getNote()
: BioFTQNote
- getNpBind()
: BioSwissProtFt
- getNRegion()
: BioFeatures
- getNucleicAcid()
: BioNucleicAcidLibrary
- getNucleicAcidName()
: BioNucleicAcid
- getNucleicAcidPosition()
: BioDnaSubstitutionMatrix
- getNumber()
: BioFTQNumber
- getNumberOf3PrimeClips()
: BioFeatures
- getNumberOf3PrimeUtrs()
: BioFeatures
- getNumberOf5PrimeClips()
: BioFeatures
- getNumberOf5PrimeUtrs()
: BioFeatures
- getNumberOf_10Signals()
: BioFeatures
- getNumberOf_35Signals()
: BioFeatures
- getNumberOf_s()
: BioFeatures
- getNumberOfAcidicAminoAcids()
: BioProteinSequence
- getNumberOfActSites()
: BioSwissProtFt
- getNumberOfAids()
: BioPubmedAid
- getNumberOfAlignments()
: BioBlast
- getNumberOfAminoAcids()
: BioSwissProtId
, BioSwissProtSq
, BioAminoAcidLibrary
- getNumberOfAtoms()
: BioChain
, BioResidue
- getNumberOfAttenuators()
: BioFeatures
- getNumberOfAus()
: BioPubmedAu
- getNumberOfBasePairs()
: BioGenBankLocus
- getNumberOfBasicAminoAcids()
: BioProteinSequence
- getNumberOfBindings()
: BioSwissProtFt
- getNumberOfCAATSignals()
: BioFeatures
- getNumberOfCaBinds()
: BioSwissProtFt
- getNumberOfCarbohyds()
: BioSwissProtFt
- getNumberOfCarbons()
: BioAminoAcid
- getNumberOfCcAllergens()
: BioSwissProtCc
- getNumberOfCcAlternativeProducts()
: BioSwissProtCc
- getNumberOfCcBioTechnologies()
: BioSwissProtCc
- getNumberOfCcCatalyticActivities()
: BioSwissProtCc
- getNumberOfCcCautions()
: BioSwissProtCc
- getNumberOfCcCoFactors()
: BioSwissProtCc
- getNumberOfCcDatabases()
: BioSwissProtCc
- getNumberOfCcDevelopmentalStages()
: BioSwissProtCc
- getNumberOfCcDiseases()
: BioSwissProtCc
- getNumberOfCcDomains()
: BioSwissProtCc
- getNumberOfCcEnzymeRegulations()
: BioSwissProtCc
- getNumberOfCcFunctions()
: BioSwissProtCc
- getNumberOfCcInductions()
: BioSwissProtCc
- getNumberOfCcMassSpectrometries()
: BioSwissProtCc
- getNumberOfCcMiscellaneous()
: BioSwissProtCc
- getNumberOfCcPathWays()
: BioSwissProtCc
- getNumberOfCcPharmaceuticals()
: BioSwissProtCc
- getNumberOfCcPolymorphisms()
: BioSwissProtCc
- getNumberOfCcPtms()
: BioSwissProtCc
- getNumberOfCcRnaEditings()
: BioSwissProtCc
- getNumberOfCcSimilarities()
: BioSwissProtCc
- getNumberOfCcSubCellularLocations()
: BioSwissProtCc
- getNumberOfCcSubUnits()
: BioSwissProtCc
- getNumberOfCcTissueSpecificities()
: BioSwissProtCc
- getNumberOfCdss()
: BioFeatures
- getNumberOfChains()
: BioPdbSingleCompnd
, BioSwissProtFt
- getNumberOfClasses()
: BioScop171
- getNumberOfColumns()
: BioMatrix
- getNumberOfCompnds()
: BioPdbCompnd
- getNumberOfConfidenceScores()
: BioPsiTabInteraction
- getNumberOfConflicts()
: BioFeatures
, BioSwissProtFt
- getNumberOfCRegions()
: BioFeatures
- getNumberOfCrossLnks()
: BioSwissProtFt
- getNumberOfDatabaseReferences()
: BioPdbDbref
- getNumberOfDbXref()
: BioFTQDbXref
- getNumberOfDetectionMethods()
: BioPsiTabInteraction
- getNumberOfDiSulfids()
: BioSwissProtFt
- getNumberOfDLoops()
: BioFeatures
- getNumberOfDnaBinds()
: BioSwissProtFt
- getNumberOfDomainEntries()
: BioScopSpecies
- getNumberOfDomains()
: BioSwissProtFt
- getNumberOfDSegments()
: BioFeatures
- getNumberOfEcs()
: BioPdbSingleCompnd
- getNumberOfEdges()
: BioGraph
- getNumberOfElements()
: BioElementLibrary
- getNumberOfEnhancers()
: BioFeatures
- getNumberOfEntries()
: BioMultiplePubmed
, BioMultipleEmbl
, BioMultipleFasta
, BioMultipleGenBank
, BioMultipleSwissProt
, BioMultipleSequences
- getNumberOfExons()
: BioFeatures
- getNumberOfFamilies()
: BioScopSuperFamily
- getNumberOfFaus()
: BioPubmedFau
- getNumberOfFiles()
: BioDatabase
- getNumberOfFolds()
: BioScopClass
- getNumberOfGaps()
: BioFeatures
, BioSingleBlast
- getNumberOfGCSignals()
: BioFeatures
- getNumberOfGenes()
: BioFeatures
, BioSwissProtGn
- getNumberOfGenomes()
: BioMultipleEmbl
, BioMultipleGenBank
- getNumberOfGoComponents()
: BioFTQNote
- getNumberOfGoFunctions()
: BioFTQNote
- getNumberOfGoProcesses()
: BioFTQNote
- getNumberOfGrs()
: BioPubmedGr
- getNumberOfHelices()
: BioSecondaryStructure
, BioProteinSecondaryStructurePrediction
, BioSecondaryStructure
- getNumberOfHelixs()
: BioSwissProtFt
- getNumberOfHydrogens()
: BioAminoAcid
- getNumberOfIdentities()
: BioSingleBlast
, BioDnaSequenceGlobalAlignment
, BioProteinSequenceGlobalAlignment
, BioDnaSequenceLocalAlignment
, BioProteinSequenceLocalAlignment
, BioDnaSequenceOverlapAlignment
, BioDnaSequenceRepeatAlignment
, BioProteinSequenceRepeatAlignment
- getNumberOfIDnas()
: BioFeatures
- getNumberOfInitMets()
: BioSwissProtFt
- getNumberOfInteractions()
: BioSif
, BioPsimiTab
- getNumberOfInteractionTypes()
: BioPsiTabInteraction
- getNumberOfInteractorAliases()
: BioPsiTabInteractor
- getNumberOfInteractorAlternateIds()
: BioPsiTabInteractor
- getNumberOfInteractorTaxonIds()
: BioPsiTabInteractor
- getNumberOfInteractorUniqueIds()
: BioPsiTabInteractor
- getNumberOfIntrons()
: BioFeatures
- getNumberOfJSegments()
: BioFeatures
- getNumberOfKws()
: BioEmblKw
, BioSwissProtKw
- getNumberOfLipids()
: BioSwissProtFt
- getNumberOfLiteractureReferences()
: BioPsiTabInteraction
- getNumberOfLtrs()
: BioFeatures
- getNumberOfMatPeptides()
: BioFeatures
- getNumberOfMetals()
: BioSwissProtFt
- getNumberOfMhs()
: BioPubmedMh
- getNumberOfMiscBindings()
: BioFeatures
- getNumberOfMiscDifferences()
: BioFeatures
- getNumberOfMiscFeatures()
: BioFeatures
- getNumberOfMiscRecombs()
: BioFeatures
- getNumberOfMiscRnas()
: BioFeatures
- getNumberOfMiscSignals()
: BioFeatures
- getNumberOfMiscStructures()
: BioFeatures
- getNumberOfMissingResidues()
: BioPdbRemark465
- getNumberOfModifiedBases()
: BioFeatures
- getNumberOfModifiedResidues()
: BioPdbModres
- getNumberOfModRess()
: BioSwissProtFt
- getNumberOfMRnas()
: BioFeatures
- getNumberOfMutagens()
: BioSwissProtFt
- getNumberOfNitrogens()
: BioAminoAcid
- getNumberOfNodeEdges()
: BioGraph
- getNumberOfNodes()
: BioGraph
- getNumberOfNonCons()
: BioSwissProtFt
- getNumberOfNonPolarAminoAcids()
: BioProteinSequence
- getNumberOfNonTers()
: BioSwissProtFt
- getNumberOfNpBinds()
: BioSwissProtFt
- getNumberOfNRegions()
: BioFeatures
- getNumberOfNucleicAcids()
: BioNucleicAcidLibrary
- getNumberOfOccurencesOfGene()
: BioMultipleEmbl
- getNumberOfOccurrences()
: BioSequence
- getNumberOfOccurrencesOfGene()
: BioMultipleGenBank
- getNumberOfOldSequences()
: BioFeatures
- getNumberOfOperons()
: BioFeatures
- getNumberOfOrfs()
: BioGenePrediction
- getNumberOfOriTs()
: BioFeatures
- getNumberOfOxygens()
: BioAminoAcid
- getNumberOfPeptides()
: BioSwissProtFt
- getNumberOfPhsts()
: BioPubmedPhst
- getNumberOfPolarAminoAcids()
: BioProteinSequence
- getNumberOfPolyASignals()
: BioFeatures
- getNumberOfPolyASites()
: BioFeatures
- getNumberOfPositives()
: BioSingleBlast
- getNumberOfPrecursorRnas()
: BioFeatures
- getNumberOfPrimerBinds()
: BioFeatures
- getNumberOfPrimTranscripts()
: BioFeatures
- getNumberOfProbes()
: BioDataSet
, BioSampleSet
- getNumberOfPromoters()
: BioFeatures
- getNumberOfPropeps()
: BioSwissProtFt
- getNumberOfProteinBinds()
: BioFeatures
- getNumberOfProteinChains()
: BioProtein
- getNumberOfProteinDomains()
: BioScopFamily
- getNumberOfPts()
: BioPubmedPt
- getNumberOfRas()
: BioEmblRa
, BioSwissProtRa
- getNumberOfRbs()
: BioFeatures
- getNumberOfReferences()
: BioEmblReference
, BioSwissProtReference
- getNumberOfReflections()
: BioHkl
- getNumberOfRepeatRegions()
: BioFeatures
- getNumberOfRepeats()
: BioProteinMultiPatternAlignment
, BioDnaMultiPatternAlignment
, BioDnaSequenceRepeatAlignment
, BioProteinSequenceRepeatAlignment
, BioSwissProtFt
- getNumberOfRepeatUnits()
: BioFeatures
- getNumberOfRepOrigins()
: BioFeatures
- getNumberOfResidues()
: BioPdbStrand
, BioChain
- getNumberOfRestrictedFragments()
: BioRestrictionMap
- getNumberOfRestrictionEnzymes()
: BioRestrictionMap
, BioRestrictionEnzymeLibrary
- getNumberOfRns()
: BioPubmedRn
- getNumberOfRows()
: BioData
, BioMatrix
- getNumberOfRRnas()
: BioFeatures
- getNumberOfSamples()
: BioDataSet
, BioProbeSet
- getNumberOfSatellites()
: BioFeatures
- getNumberOfSbs()
: BioPubmedSb
- getNumberOfSCRnas()
: BioFeatures
- getNumberOfSecondaryStructureChainIds()
: BioSecondaryStructure
- getNumberOfSeCyss()
: BioSwissProtFt
- getNumberOfSharedNeighbors()
: BioGraph
- getNumberOfSheets()
: BioSecondaryStructure
- getNumberOfSignals()
: BioSwissProtFt
- getNumberOfSigPeptides()
: BioFeatures
- getNumberOfSimilarities()
: BioProteinSequenceGlobalAlignment
, BioProteinSequenceLocalAlignment
, BioProteinSequenceRepeatAlignment
- getNumberOfSis()
: BioPubmedSi
- getNumberOfSites()
: BioSwissProtFt
- getNumberOfSNORnas()
: BioFeatures
- getNumberOfSNRnas()
: BioFeatures
- getNumberOfSourceDatabases()
: BioPsiTabInteraction
- getNumberOfSources()
: BioPdbSource
, BioFeatures
- getNumberOfSpaceGroups()
: BioSpaceGroupLibrary
- getNumberOfSpecies()
: BioScopProteinDomain
- getNumberOfSRegions()
: BioFeatures
- getNumberOfSSRs()
: BioSequence
- getNumberOfStdCodons()
: BioCodonLibrary
- getNumberOfStemLoops()
: BioFeatures
- getNumberOfStrands()
: BioProteinSecondaryStructurePrediction
, BioGenBankLocus
, BioPdbSheet
, BioSwissProtFt
- getNumberOfSts()
: BioFeatures
- getNumberOfSubDirectories()
: BioDatabase
- getNumberOfSubDirectoryListRecursively()
: BioDatabase
- getNumberOfSubstitutionMatrices()
: BioDnaSubstitutionMatrix
, BioProteinSubstitutionMatrix
- getNumberOfSulphurs()
: BioAminoAcid
- getNumberOfSuperFamilies()
: BioScopFold
- getNumberOfSymmetryOperators()
: BioSpaceGroup
- getNumberOfTATASignals()
: BioFeatures
- getNumberOfTerminators()
: BioFeatures
- getNumberOfTransitPeptides()
: BioFeatures
- getNumberOfTransits()
: BioSwissProtFt
- getNumberOfTransMems()
: BioSwissProtFt
- getNumberOfTRnas()
: BioFeatures
- getNumberOfTurns()
: BioSecondaryStructure
, BioProteinSecondaryStructurePrediction
, BioSecondaryStructure
, BioSwissProtFt
- getNumberOfUniqueEntries()
: BioMultipleFasta
- getNumberOfUniqueProteinChainIds()
: BioProtein
- getNumberOfUnsures()
: BioSwissProtFt
, BioFeatures
- getNumberOfVariants()
: BioSwissProtFt
- getNumberOfVariations()
: BioFeatures
- getNumberOfVarSplics()
: BioSwissProtFt
- getNumberOfVRegions()
: BioFeatures
- getNumberOfVSegments()
: BioFeatures
- getNumberOfWaters()
: BioProtein
, BioWater
- getNumberOfYDataSets()
: BioData
- getNumberOfZnFings()
: BioSwissProtFt
- getObservableStates()
: BioHmm
- getOccupancy()
: BioAtom
- getOffset()
: BioGde
- getOg()
: BioEmblOg
, BioSwissProtOg
- getOldLocusTag()
: BioFTQOldLocusTag
- getOldSequence()
: BioFeatures
- getOperon()
: BioFeatures
, BioFTQOperon
- getOrfs()
: BioGenePrediction
- getOrgan()
: BioPdbSingleSource
- getOrganelle()
: BioFTQOrganelle
, BioPdbSingleSource
- getOrganism()
: BioFTQOrganism
- getOrganismCommon()
: BioPdbSingleSource
- getOrganismName()
: BioGenBankSource
, BioRestrictionEnzymeLibrary
, BioPsiTabInteractorTaxonId
- getOrganismScientific()
: BioPdbSingleSource
- getOrganismStrain()
: BioRestrictionEnzymeLibrary
- getOrigxnMatrix()
: BioPdbOrigxn
- getOrigxnSize()
: BioPdbOrigxn
- getOriT()
: BioFeatures
- getOs()
: BioSwissProtOs
- getOtherDetails()
: BioPdbSingleCompnd
, BioPdbSingleSource
- getOthers()
: BioEmblSq
- getOwn()
: BioPubmedOwn
- getPcrB()
: BioEst
- getPCRConditions()
: BioFTQPCRConditions
- getPcrF()
: BioEst
- getPdbFile()
: BioUrl
- getPdbId()
: BioPdbHeader
- getPdbIdsWithChids()
: BioUrl
- getPEnd()
: BioEst
- getPeptide()
: BioSwissProtFt
- getPercentAT()
: BioDnaSequence
- getPercentGC()
: BioDnaSequence
- getPg()
: BioPubmedPg
- getPhenotype()
: BioFTQPhenotype
- getPhst()
: BioPubmedPhst
, BioPubmedSinglePhst
- getpKaAmine()
: BioAminoAcid
- getpKaCarboxylate()
: BioAminoAcid
- getpKaSideChain()
: BioAminoAcid
- getPl()
: BioPubmedPl
- getPlasmid()
: BioFTQPlasmid
, BioPdbSingleSource
, BioSwissProtRc
- getPlate()
: BioEst
- getPmid()
: BioPubmedPmid
, BioSwissProtRx
, BioEmblRx
- getPolyA()
: BioEst
- getPolyASignal()
: BioFeatures
- getPolyASite()
: BioFeatures
- getPopVariant()
: BioFTQPopVariant
- getPositionsOfAcidicAminoAcids()
: BioProteinSequence
- getPositionsOfBasicAminoAcids()
: BioProteinSequence
- getPositionsOfNonPolarAminoAcids()
: BioProteinSequence
- getPositionsOfPattern()
: BioSequence
- getPositionsOfPolarAminoAcids()
: BioProteinSequence
- getPositionsOfSSRs()
: BioSequence
- getPrecursorRna()
: BioFeatures
- getPredictedSequence()
: BioProteinSecondaryStructurePrediction
- getPrimaryAccessionNumber()
: BioEmblAc
, BioSwissProtAc
, BioGenBankAccession
- getPrimaryIdentifier()
: BioEmblSingleDr
, BioEmblSingleAs
, BioSwissProtSingleDr
- getPrimarySpan()
: BioEmblSingleAs
- getPrimerBind()
: BioFeatures
- getPrimTranscript()
: BioFeatures
- getProbeCorrelationCoefficient()
: BioDataSet
- getProbeIndex()
: BioDataSet
- getProbeIndexListExcludingAllNullProbes()
: BioDataSet
- getProbeName()
: BioProbeSet
, BioSampleSet
- getProbeNameSet()
: BioSampleSet
- getProbeReference()
: BioSampleSet
, BioProbeSet
- getProbeReferenceSet()
: BioSampleSet
- getProbeRMSD()
: BioDataSet
- getProbeSet()
: BioDataSet
- getProduct()
: BioFTQProduct
- getProfileMatrix()
: BioProteinMultipleSequenceAlignment
, BioMultipleSequenceAlignment
, BioDnaMultipleSequenceAlignment
- getPromoter()
: BioFeatures
- getPropep()
: BioSwissProtFt
- getProteinBind()
: BioFeatures
- getProteinChain()
: BioProtein
- getProteinChainIdIndex()
: BioProtein
- getProteinChainIds()
: BioProtein
- getProteinChains()
: BioProtein
- getProteinConcentration()
: BioProteinSequence
- getProteinDomain()
: BioScopFamily
- getProteinId()
: BioFTQProteinId
- getProteinIds()
: BioUrl
- getPrototype()
: BioRestrictionEnzymeLibrary
- getPsiSourceDbId()
: BioPsiTabInteractionSourceDb
- getPsiSourceDbName()
: BioPsiTabInteractionSourceDb
- getPst()
: BioPubmedPst
- getPt()
: BioPubmedPt
, BioPubmedSinglePt
- getPublic()
: BioEst
- getPublicationId()
: BioPsiTabInteractionLiteratureReference
- getPublicationYear()
: BioPsiTabInteractionLiteratureReference
- getPubMedFile()
: BioUrl
- getPubmedIds()
: BioUrl
- getPutID()
: BioEst
- getQueryName()
: BioBlast
- getRa()
: BioEmblRa
, BioSwissProtRa
- getRbs()
: BioFeatures
- getRc()
: BioEmblRc
- getReference()
: BioSwissProtReference
, BioEmblReference
- getReferenceDatabases()
: BioPdbDbref
- getRepeat()
: BioDnaMultiPatternAlignment
, BioProteinMultiPatternAlignment
, BioProteinSequenceRepeatAlignment
, BioDnaSequenceRepeatAlignment
, BioSwissProtFt
- getRepeatEndingPosition()
: BioDnaMultiPatternAlignment
, BioDnaSequenceRepeatAlignment
, BioProteinMultiPatternAlignment
, BioProteinSequenceRepeatAlignment
- getRepeatRegion()
: BioFeatures
- getRepeatScore()
: BioProteinSequenceRepeatAlignment
, BioDnaSequenceRepeatAlignment
- getRepeatStartingPosition()
: BioProteinSequenceRepeatAlignment
, BioDnaSequenceRepeatAlignment
, BioProteinMultiPatternAlignment
, BioDnaMultiPatternAlignment
- getRepeatUnit()
: BioFeatures
- getReplace()
: BioFTQReplace
- getRepOrigin()
: BioFeatures
- getResidue()
: BioChain
- getResidueIndex()
: BioChain
- getResidueName()
: BioResidue
- getResidueNumber()
: BioResidue
- getResidues()
: BioChain
- getResolution()
: BioPdbRemark2
- getRestrictedFragments()
: BioRestrictionMap
- getRestrictedPositions()
: BioRestrictionMap
- getRestrictionEnzyme()
: BioRestrictionEnzymeLibrary
, BioRestrictionMap
- getRestrictionEnzymeIndex()
: BioRestrictionMap
- getRestrictionEnzymeList()
: BioRestrictionMap
- getRestrictionEnzymes()
: BioRestrictionEnzymeLibrary
- getRestrictionSite()
: BioRestrictionEnzymeLibrary
- getRf()
: BioPubmedRf
- getRg()
: BioSwissProtRg
, BioEmblRg
- getRGBColor()
: BioHtml
- getRl()
: BioSwissProtRl
, BioEmblRl
- getRMSD()
: BioStatistics
- getRn()
: BioPubmedSingleRn
, BioPubmedRn
, BioSwissProtRn
, BioEmblRn
- getRotatedAtom()
: BioAtom
- getRotatedPoint()
: BioPoint
- getRotatedProteinChain()
: BioProteinChain
- getRotationMatrix()
: BioSymmetryOperators
- getRotoTranslatedAtom()
: BioAtom
- getRotoTranslatedPoint()
: BioPoint
- getRow()
: BioEst
- getRp()
: BioSwissProtRp
, BioEmblRp
- getRptFamily()
: BioFTQRptFamily
- getRptType()
: BioFTQRptType
- getRptUnit()
: BioFTQRptUnit
- getRptUnitFinalPosition()
: BioFTQRptUnit
- getRptUnitInitialPosition()
: BioFTQRptUnit
- getRptUnitName()
: BioFTQRptUnit
- getRRna()
: BioFeatures
- getRt()
: BioEmblRt
, BioSwissProtRt
- getSampleCorrelationCoefficient()
: BioDataSet
- getSampleIndex()
: BioDataSet
- getSampleName()
: BioSampleSet
- getSampleRMSD()
: BioDataSet
- getSampleSet()
: BioDataSet
- getSatellite()
: BioFeatures
- getSb()
: BioPubmedSb
, BioPubmedSingleSb
- getScalenMatrix()
: BioPdbScalen
- getScalenSize()
: BioPdbScalen
- getScopId()
: BioScopDomainEntry
- getScopUniqueId()
: BioScopDomainEntry
, BioScopFold
, BioScopSpecies
, BioScopClass
, BioScopSuperFamily
, BioScopProteinDomain
, BioScopFamily
- getScore()
: BioDnaSequenceGlobalAlignment
, BioProteinSequenceGlobalAlignment
, BioDnaMultiPatternAlignment
, BioProteinSequenceRepeatAlignment
, BioSingleBlast
, BioDnaSequenceRepeatAlignment
, BioProteinSequenceLocalAlignment
, BioDnaSequenceOverlapAlignment
, BioDnaSequenceLocalAlignment
, BioProteinMultiPatternAlignment
- getSCRna()
: BioFeatures
- getSecondaryIdentifier()
: BioSwissProtSingleDr
, BioEmblSingleDr
- getSecondaryStructureChainId()
: BioSecondaryStructure
- getSecondaryStructureSequence()
: BioSecondaryStructure
- getSeconds()
: BioTime
- getSecretion()
: BioPdbSingleSource
- getSeCys()
: BioSwissProtFt
- getSegment()
: BioFTQSegment
- getSeqPrimer()
: BioEst
- getSeqresChainId()
: BioPdbSeqres
- getSeqresNumberOfChainIds()
: BioPdbSeqres
- getSeqresSequence()
: BioPdbSeqres
- getSeqresSequenceLength()
: BioPdbSeqres
- getSeqresSequenceSegment()
: BioPdbSeqres
- getSequence()
: BioSwptFTKSingleStrand
, BioProteinChain
, BioSwptFTKSingleZnFing
, BioSwptFTKSingleCrossLnk
, BioSwptFTKSingleHelix
, BioSwptFTKSingleCaBind
, BioSwptFTKSingleVariant
, BioSwptFTKSingleUnsure
, BioSwptFTKSingleSeCys
, BioSwptFTKSingleTransit
, BioSequence
, BioEst
, BioFTLSingleBaseRange
, BioFTLBaseRange
, BioSwptFTKSingleSignal
, BioSwptFTKSingleRepeat
, BioSwptFTKSingleActSite
, BioSwptFTKSingleConflict
, BioSwptFTKSingleNonTer
, BioSwptFTKSingleMutagen
, BioSwptFTKSingleDiSulfid
, BioSwptFTKSingleMetal
, BioSwptFTKSingleModRes
, BioSwptFTKSingleCarbohyd
, BioSwptFTKSingleDnaBind
, BioSwptFTKSingleDomain
, BioSwptFTKSingleLipid
, BioSwptFTKSingleInitMet
, BioSwptFTKSingleNonCons
, BioSwptFTKSingleBinding
, BioSwptFTKSinglePropep
, BioSwptFTKSingleNpBind
, BioGde
, BioSwptFTKSinglePeptide
, BioSwptFTKSingleSite
, BioSwptFTKSingleTurn
, BioSwptFTKSingleChain
, BioSwptFTKSingleVarSplic
, BioRestrictionEnzymeLibrary
, BioSwptFTKSingleTransMem
- getSequence1AlignedPosition()
: BioDnaSequenceLocalAlignment
, BioProteinSequenceLocalAlignment
- getSequence2AlignedPosition()
: BioProteinSequenceLocalAlignment
, BioDnaSequenceLocalAlignment
- getSequencedMol()
: BioFTQSequencedMol
- getSequenceID()
: BioGde
- getSequenceIndex()
: BioMultipleSequences
- getSequenceLength()
: BioSequence
, BioSingleBlast
, BioProteinChain
- getSequenceName()
: BioSequence
, BioSingleBlast
- getSequenceSegment()
: BioProteinChain
, BioSequence
- getSerialNumber()
: BioNucleicAcid
, BioAminoAcid
- getSerotype()
: BioFTQSerotype
- getSerovar()
: BioFTQSerovar
- getSex()
: BioFTQSex
- getSharedNeighborIds()
: BioGraph
- getSheet()
: BioSecondaryStructure
- getSheetCoordinates()
: BioPdbSheet
- getSheetDirectionCosines()
: BioSecondaryStructure
, BioPdbSheet
- getSheetId()
: BioPdbSheet
- getSheetIdIndex()
: BioSecondaryStructure
- getSheetSequence()
: BioPdbSheet
, BioSecondaryStructure
- getShuffledSequence()
: BioSequence
- getSi()
: BioPubmedSingleSi
, BioPubmedSi
- getSifInteraction()
: BioSif
- getSignal()
: BioProbeSet
, BioSwissProtFt
, BioSampleSet
- getSignalSet()
: BioProbeSet
, BioSampleSet
- getSigPeptide()
: BioFeatures
- getSimilarColumnPositions()
: BioClustal
- getSingleLetterCode()
: BioAminoAcid
, BioNucleicAcid
- getSite()
: BioSwissProtFt
- getSizeOfStrandVector()
: BioPdbSheet
- getSNORna()
: BioFeatures
- getSNRna()
: BioFeatures
- getSo()
: BioPubmedSo
- getsockopt()
: BioSocket
- getSource()
: BioGenBankSource
, BioPdbSource
, BioFeatures
, BioEst
- getSourceDb()
: BioPsiTabInteraction
- getSourceDna()
: BioEst
- getSourceInHost()
: BioEst
- getSpaceGroup()
: BioPdbCryst1
, BioHkl
- getSpaceGroupName()
: BioSpaceGroupLibrary
- getSpecies()
: BioScopProteinDomain
, BioSwissProtRc
- getSpecificHost()
: BioFTQSpecificHost
- getSpecimenVoucher()
: BioFTQSpecimenVoucher
- getSqBasePairs()
: BioEmblSq
- getSRegion()
: BioFeatures
- getStandardAminoAcids()
: BioAminoAcidLibrary
- getStandardDeviation()
: BioProbeSet
, BioStatistics
, BioDataSet
, BioStatistics
, BioSampleSet
, BioStatistics
- getStandardName()
: BioFTQStandardName
- getStandardResidueName()
: BioPdbModres
- getStandardResidueNames()
: BioPdbModres
- getStartingBasePosition()
: BioFTLSingleBaseRange
- getStartingPosition()
: BioSwptFTKSingleSeCys
, BioSwptFTKSingleTurn
, BioSwptFTKSingleCaBind
, BioSwptFTKSingleNpBind
, BioSwptFTKSingleMutagen
, BioSwptFTKSingleUnsure
, BioSwptFTKSingleMetal
, BioSwptFTKSingleBinding
, BioSwptFTKSingleTransMem
, BioSwptFTKSingleDomain
, BioSwptFTKSingleNonTer
, BioSwptFTKSingleModRes
, BioSwptFTKSingleConflict
, BioSwptFTKSinglePropep
, BioSwptFTKSingleTransit
, BioSwptFTKSingleActSite
, BioSwptFTKSingleCarbohyd
, BioSwptFTKSingleSignal
, BioSwptFTKSingleStrand
, BioSwptFTKSingleDnaBind
, BioSwptFTKSingleDiSulfid
, BioSwptFTKSingleCrossLnk
, BioSwptFTKSinglePeptide
, BioSwptFTKSingleHelix
, BioSwptFTKSingleVariant
, BioSwptFTKSingleInitMet
, BioSwptFTKSingleZnFing
, BioSwptFTKSingleNonCons
, BioSwptFTKSingleLipid
, BioSwptFTKSingleRepeat
, BioSwptFTKSingleChain
, BioSwptFTKSingleSite
, BioSwptFTKSingleVarSplic
- getStat()
: BioPubmedStat
- getStatus()
: BioEst
- getStdCodon()
: BioCodonLibrary
- getStemLoop()
: BioFeatures
- getStrain()
: BioPdbSingleSource
, BioSwissProtRc
, BioFTQStrain
- getStrand()
: BioPdbSheet
, BioProteinSecondaryStructurePrediction
, BioSwissProtFt
- getStrandCoordinates()
: BioPdbStrand
- getStrandedness()
: BioGde
- getStrandName()
: BioEmblId
- getStrandSense()
: BioPdbStrand
- getStrandSequence()
: BioPdbStrand
- getStrandSerialNumber()
: BioPdbStrand
- getStrandTopology()
: BioGenBankLocus
- getStrandType()
: BioGenBankLocus
- getSts()
: BioFeatures
- getSubClone()
: BioFTQSubClone
- getSubDirectory()
: BioDatabase
- getSubDirectoryIndex()
: BioDatabase
- getSubDirectoryListRecursively()
: BioDatabase
- getSubDirectoryWithFullPath()
: BioDatabase
- getSubSpecies()
: BioFTQSubSpecies
- getSubstitutionMatrix()
: BioProteinSubstitutionMatrix
, BioDnaSubstitutionMatrix
- getSubstitutionMatrixName()
: BioDnaSubstitutionMatrix
, BioProteinSubstitutionMatrix
- getSubstitutionValue()
: BioProteinSubstitutionMatrix
, BioDnaSubstitutionMatrix
- getSubStrain()
: BioFTQSubStrain
- getSuperFamily()
: BioScopFold
- getSuperFamilyId()
: BioScopSuperFamily
- getSwissProtFile()
: BioUrl
- getSymmetryOperator()
: BioSpaceGroup
- getSynonym()
: BioPdbSingleCompnd
- getSynthetic()
: BioPdbSingleSource
- getT()
: BioEmblSq
- getTa()
: BioPubmedTa
- getTATASignal()
: BioFeatures
- getTaxanomy()
: BioGenBankSource
- getTaxonId()
: BioPsiTabInteractor
- getTerminator()
: BioFeatures
- getTertiaryIdentifier()
: BioSwissProtSingleDr
- getThreeLetterCode()
: BioAminoAcid
- getTi()
: BioPubmedTi
- getTissue()
: BioPdbSingleSource
, BioSwissProtRc
- getTissueLib()
: BioFTQTissueLib
- getTissueType()
: BioFTQTissueType
- getTm()
: BioDnaSequence
- getTopologicalCoefficient()
: BioGraph
- getTorsionAngle()
: BioResidue
- getTotal()
: BioStatistics
- getTpaSpan()
: BioEmblSingleAs
- getTransit()
: BioSwissProtFt
- getTransitPeptide()
: BioFeatures
- getTranslatedAtom()
: BioAtom
- getTranslatedPoint()
: BioPoint
- getTranslatedSequence()
: BioDnaSequence
- getTranslation()
: BioFTQTranslation
- getTranslationMatrix()
: BioSymmetryOperators
- getTranslExceptAminoAcid()
: BioFTQTranslExcept
- getTranslTableNumber()
: BioFTQTranslTable
- getTransMem()
: BioSwissProtFt
- getTransposedMatrix()
: BioMatrix
- getTransposon()
: BioSwissProtRc
, BioFTQTransposon
- getTRna()
: BioFeatures
- getTt()
: BioPubmedTt
- getTurn()
: BioSecondaryStructure
, BioProteinSecondaryStructurePrediction
, BioSecondaryStructure
, BioSwissProtFt
- getTurnCoordinates()
: BioPdbTurn
- getTurnId()
: BioPdbTurn
- getTurnIdIndex()
: BioSecondaryStructure
- getTurnLength()
: BioPdbTurn
- getTurnSequence()
: BioSecondaryStructure
, BioPdbTurn
- getTurnSerialNumber()
: BioPdbTurn
- getType()
: BioGde
, BioPsiTabInteractorAlias
, BioEst
, BioPsiTabInteractionType
- getUnAmbigousRestrictionEnzymes()
: BioRestrictionEnzymeLibrary
- getUniqueAmbigousRestrictionEnzymes()
: BioRestrictionEnzymeLibrary
- getUniqueEntries()
: BioMultipleFasta
- getUniqueGenes()
: BioMultipleGenBank
- getUniqueId()
: BioPsiTabInteractor
- getUniqueOrganisms()
: BioMultipleGenBank
, BioMultipleSwissProt
- getUniqueProteinChainIds()
: BioProtein
- getUniqueUnAmbigousRestrictionEnzymes()
: BioRestrictionEnzymeLibrary
- getUnitVectorCoordinate1()
: BioSymmetryUnitVector
- getUnitVectorCoordinate2()
: BioSymmetryUnitVector
- getUnitVectorCoordinate3()
: BioSymmetryUnitVector
- getUnitVectorTranslation()
: BioSymmetryUnitVector
- getUnsure()
: BioSwissProtFt
, BioFeatures
- getUpperBoundBasePosition()
: BioFTLSingleSite
, BioFTLSingleBase
- getUpperBoundEndingBasePosition()
: BioFTLSingleBaseRange
- getUpperBoundStartingBasePosition()
: BioFTLSingleBaseRange
- getUsedIn()
: BioFTQUsedIn
- getUsedInLabel()
: BioFTQUsedIn
- getVariance()
: BioStatistics
- getVariant()
: BioPdbSingleSource
, BioSwissProtFt
- getVariation()
: BioFeatures
- getVariety()
: BioFTQVariety
- getVarSplic()
: BioSwissProtFt
- getVersionNumber()
: BioGenBankVersion
, BioFTQProteinId
- getVi()
: BioPubmedVi
- getVolume()
: BioHkl
- getVRegion()
: BioFeatures
- getVSegment()
: BioFeatures
- getWater()
: BioProtein
, BioWater
- getWaterIndex()
: BioWater
- getWaterMolecule()
: BioProtein
- getWaterNumber()
: BioWater
- getWeek()
: BioTime
- getWidth()
: BioPostScript
- getX()
: BioPoint
- getXDataSet()
: BioData
- getY()
: BioPoint
- getYDataSet()
: BioData
- getYear()
: BioTime
- getZ()
: BioPdbCryst1
, BioPoint
- getZnFing()
: BioSwissProtFt
- gis
: sequence_info