BioProtein Class Reference

#include <BioProtein.h>

Inheritance diagram for BioProtein:

List of all members.

Public Member Functions
	BioProtein ()
	~BioProtein ()
	BioProtein (const string &)
	BioProtein (const vector< BioProteinChain > &, const BioWater &)
	BioProtein (const vector< BioProteinChain > &)
char	getLastChainId () const
BioProteinChain &	getLastChain ()
unsigned int	getNumberOfProteinChains () const
unsigned int	getNumberOfWaters () const
void	showProteinChainIds (ostream &=cout)
void	showUniqueProteinChainIds (ostream &=cout)
void	mergeProteinChainsWithDuplicateIds ()
vector< char >	getProteinChainIds ()
vector< BioProteinChain >	getProteinChains ()
vector< char >	getUniqueProteinChainIds ()
int	getNumberOfUniqueProteinChainIds ()
vector< int >	getDuplicateChainIndices (char c)
void	pushProteinChain (const BioProteinChain &)
void	pushProteinChain (const unsigned long &atnumber, const string &atname, const string &resname, const char &ch, const long &resnum, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &)
BioProteinChain &	getProteinChain (const int &)
BioProteinChain &	getProteinChain (const char &)
BioProteinChain	getProteinChain (const int &, const string &)
void	showProtein (ostream &=cout)
int	getProteinChainIdIndex (const char &)
void	showProteinChain (const char &, ostream &=cout)
void	showProteinChain (const int &, ostream &=cout)
void	showWater (ostream &os=cout)
BioResidue	getWaterMolecule (const int &)
BioWater	getWater ()

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Constructor & Destructor Documentation

BioProtein::BioProtein

(

)

BioProtein::~BioProtein

(

)

BioProtein::BioProtein

(

const string &

)

BioProtein::BioProtein	(	const vector< BioProteinChain > &	,
		const BioWater &
	)

BioProtein::BioProtein

(

const vector< BioProteinChain > &

)

---

Member Function Documentation

vector<int> BioProtein::getDuplicateChainIndices

(

char

c

)

BioProteinChain& BioProtein::getLastChain

(

)

char BioProtein::getLastChainId

(

)

const

unsigned int BioProtein::getNumberOfProteinChains

(

)

const

int BioProtein::getNumberOfUniqueProteinChainIds

(

)

unsigned int BioProtein::getNumberOfWaters

(

)

const

BioProteinChain& BioProtein::getProteinChain

(

const int &

)

BioProteinChain& BioProtein::getProteinChain

(

const char &

)

BioProteinChain BioProtein::getProteinChain	(	const int &	,
		const string &
	)

int BioProtein::getProteinChainIdIndex

(

const char &

)

vector<char> BioProtein::getProteinChainIds

(

)

vector<BioProteinChain> BioProtein::getProteinChains

(

)

vector<char> BioProtein::getUniqueProteinChainIds

(

)

BioWater BioProtein::getWater

(

)

BioResidue BioProtein::getWaterMolecule

(

const int &

)

void BioProtein::mergeProteinChainsWithDuplicateIds

(

)

void BioProtein::pushProteinChain

(

const BioProteinChain &

)

void BioProtein::pushProteinChain	(	const unsigned long &	atnumber,
		const string &	atname,
		const string &	resname,
		const char &	ch,
		const long &	resnum,
		const float &	x1,
		const float &	y1,
		const float &	z1,
		const float &	oc1,
		const float &	bf1,
		const string &
	)

void BioProtein::showProtein

(

ostream &

= cout

)

void BioProtein::showProteinChain	(	const char &	,
		ostream &	= cout
	)

void BioProtein::showProteinChain	(	const int &	,
		ostream &	= cout
	)

void BioProtein::showProteinChainIds

(

ostream &

= cout

)

void BioProtein::showUniqueProteinChainIds

(

ostream &

= cout

)

void BioProtein::showWater

(

ostream &

os = cout

)

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The documentation for this class was generated from the following file:

• BioProtein.h