BioProteinChain Class Reference

#include <BioProteinChain.h>

Inheritance diagram for BioProteinChain:

Collaboration diagram for BioProteinChain:

List of all members.

Public Member Functions
	BioProteinChain ()
	~BioProteinChain ()
	BioProteinChain (const string &)
	BioProteinChain (const string &, const char &)
	BioProteinChain (const char &chid, const vector< BioResidue > &)
	BioProteinChain (const long &atnumber, const string &atname, const string &resname, const char &ch, const long &resnumber, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &atrec)
BioProteinChain	getChainSegment (const long &first, const long &last)
BioProteinChain	getChainSegment (const long &first, const long &last, const string &atname)
BioProteinChain	eraseHydrogen ()
BioProteinChain	operator+ (BioProteinChain &)
BioProteinChain	operator+ (BioResidue &)
string	getSequence ()
long	getSequenceLength ()
void	showInFasta (ostream &os=cout)
string	getSequenceSegment (const long &, const long &)
BioProteinChain	getRotatedProteinChain (const float **arr)
void	showChiAngles (ostream &=cout)
void	showPhiPsiOmega (ostream &=cout)
void	setRamaPlotColorSpec (float=96.0, float=128.99, float=170.9, float=249, float=219, float=31.98, float=0, float=0, float=0)
void	showRamaChandranPlot (BioPostScript &bioPostScriptObject, int type=FILLED_TRIANGLE, int pointWidth=3.2, int startX=80, int startY=250, int width=450, int height=450)
void	setProteinDisplayArea (double startx=80, double starty=250, double size=450)
void	showProteinChain (BioPostScript &obj, double width=1, double r=0, double g=0, double b=0)
void	showCAlphaTrace (BioPostScript &bioPostScriptObject, double width=1, double r=0, double g=0, double b=0)
void	showBackBone (BioPostScript &ps, double width=1, double r=255, double g=0, double b=0)
Friends
bool	operator> (const BioProteinChain &, const BioProteinChain &)
bool	operator< (const BioProteinChain &, const BioProteinChain &)
bool	operator== (const BioProteinChain &, const BioProteinChain &)
ostream &	operator<< (ostream &os, BioProteinChain &ip)
BioProteinChain	operator+ (BioResidue &, BioResidue &)

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Constructor & Destructor Documentation

BioProteinChain::BioProteinChain

(

)

BioProteinChain::~BioProteinChain

(

)

[inline]

BioProteinChain::BioProteinChain

(

const string &

)

BioProteinChain::BioProteinChain	(	const string &	,
		const char &
	)

BioProteinChain::BioProteinChain	(	const char &	chid,
		const vector< BioResidue > &
	)

BioProteinChain::BioProteinChain	(	const long &	atnumber,
		const string &	atname,
		const string &	resname,
		const char &	ch,
		const long &	resnumber,
		const float &	x1,
		const float &	y1,
		const float &	z1,
		const float &	oc1,
		const float &	bf1,
		const string &	atrec
	)

---

Member Function Documentation

BioProteinChain BioProteinChain::eraseHydrogen

(

)

Reimplemented from BioChain.

BioProteinChain BioProteinChain::getChainSegment	(	const long &	first,
		const long &	last
	)

Reimplemented from BioChain.

BioProteinChain BioProteinChain::getChainSegment	(	const long &	first,
		const long &	last,
		const string &	atname
	)

Reimplemented from BioChain.

BioProteinChain BioProteinChain::getRotatedProteinChain

(

const float **

arr

)

string BioProteinChain::getSequence

(

)

long BioProteinChain::getSequenceLength

(

)

string BioProteinChain::getSequenceSegment	(	const long &	,
		const long &
	)

BioProteinChain BioProteinChain::operator+

(

BioProteinChain &

)

BioProteinChain BioProteinChain::operator+

(

BioResidue &

)

void BioProteinChain::setProteinDisplayArea	(	double	startx = 80,
		double	starty = 250,
		double	size = 450
	)

void BioProteinChain::setRamaPlotColorSpec	(	float	= 96.0,
		float	= 128.99,
		float	= 170.9,
		float	= 249,
		float	= 219,
		float	= 31.98,
		float	= 0,
		float	= 0,
		float	= 0
	)

void BioProteinChain::showBackBone	(	BioPostScript &	ps,
		double	width = 1,
		double	r = 255,
		double	g = 0,
		double	b = 0
	)

void BioProteinChain::showCAlphaTrace	(	BioPostScript &	bioPostScriptObject,
		double	width = 1,
		double	r = 0,
		double	g = 0,
		double	b = 0
	)

void BioProteinChain::showChiAngles

(

ostream &

= cout

)

void BioProteinChain::showInFasta

(

ostream &

os = cout

)

void BioProteinChain::showPhiPsiOmega

(

ostream &

= cout

)

void BioProteinChain::showProteinChain	(	BioPostScript &	obj,
		double	width = 1,
		double	r = 0,
		double	g = 0,
		double	b = 0
	)

void BioProteinChain::showRamaChandranPlot	(	BioPostScript &	bioPostScriptObject,
		int	type = FILLED_TRIANGLE,
		int	pointWidth = 3.2,
		int	startX = 80,
		int	startY = 250,
		int	width = 450,
		int	height = 450
	)

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Friends And Related Function Documentation

BioProteinChain operator+	(	BioResidue &	,
		BioResidue &
	)		[friend]

bool operator<	(	const BioProteinChain &	,
		const BioProteinChain &
	)		[friend]

ostream& operator<<	(	ostream &	os,
		BioProteinChain &	ip
	)		[friend]

bool operator==	(	const BioProteinChain &	,
		const BioProteinChain &
	)		[friend]

bool operator>	(	const BioProteinChain &	,
		const BioProteinChain &
	)		[friend]

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The documentation for this class was generated from the following file:

• BioProteinChain.h