Here are the classes, structs, unions and interfaces with brief descriptions:

BioAminoAcid
BioAminoAcidLibrary
BioAtom
BioBasicSocketBuffer< _CharT, _Traits >
BioBasicSocketStream< _CharT, _Traits >
BioBlast
BioChain
BioClustal
BioCodonLibrary
BioData
BioDatabase
BioDataSet
BioDdbj
BioDnaMultiPatternAlignment
BioDnaMultipleSequenceAlignment
BioDnaSequence
BioDnaSequenceAlignment
BioDnaSequenceDotPlot
BioDnaSequenceGlobalAlignment
BioDnaSequenceLocalAlignment
BioDnaSequenceOverlapAlignment
BioDnaSequenceRepeatAlignment
BioDnaSubstitutionMatrix
BioElement
BioElementLibrary
BioEmbl
BioEmblAc
BioEmblAs
BioEmblCc
BioEmblCo
BioEmblDe
BioEmblDr
BioEmblDt
BioEmblFt
BioEmblId
BioEmblKw
BioEmblOc
BioEmblOg
BioEmblOs
BioEmblRa
BioEmblRc
BioEmblReference
BioEmblRg
BioEmblRl
BioEmblRn
BioEmblRp
BioEmblRt
BioEmblRx
BioEmblSequence
BioEmblSingleAs
BioEmblSingleDr
BioEmblSingleReference
BioEmblSq
BioEmblSv
BioEst
BioFasta
BioFeatures
BioFTKSingle3PrimeClip
BioFTKSingle3PrimeUtr
BioFTKSingle5PrimeClip
BioFTKSingle5PrimeUtr
BioFTKSingle_
BioFTKSingle_10Signal
BioFTKSingle_35Signal
BioFTKSingleAttenuator
BioFTKSingleCAATSignal
BioFTKSingleCds
BioFTKSingleConflict
BioFTKSingleCRegion
BioFTKSingleDLoop
BioFTKSingleDSegment
BioFTKSingleEnhancer
BioFTKSingleExon
BioFTKSingleGap
BioFTKSingleGCSignal
BioFTKSingleGene
BioFTKSingleIDna
BioFTKSingleIntron
BioFTKSingleJSegment
BioFTKSingleLtr
BioFTKSingleMatPeptide
BioFTKSingleMiscBinding
BioFTKSingleMiscDifference
BioFTKSingleMiscFeature
BioFTKSingleMiscRecomb
BioFTKSingleMiscRna
BioFTKSingleMiscSignal
BioFTKSingleMiscStructure
BioFTKSingleModifiedBase
BioFTKSingleMRna
BioFTKSingleNRegion
BioFTKSingleOldSequence
BioFTKSingleOperon
BioFTKSingleOriT
BioFTKSinglePolyASignal
BioFTKSinglePolyASite
BioFTKSinglePrecursorRna
BioFTKSinglePrimerBind
BioFTKSinglePrimTranscript
BioFTKSinglePromoter
BioFTKSingleProteinBind
BioFTKSingleRbs
BioFTKSingleRepeatRegion
BioFTKSingleRepeatUnit
BioFTKSingleRepOrigin
BioFTKSingleRRna
BioFTKSingleSatellite
BioFTKSingleSCRna
BioFTKSingleSigPeptide
BioFTKSingleSNORna
BioFTKSingleSNRna
BioFTKSingleSource
BioFTKSingleSRegion
BioFTKSingleStemLoop
BioFTKSingleSts
BioFTKSingleTATASignal
BioFTKSingleTerminator
BioFTKSingleTransitPeptide
BioFTKSingleTRna
BioFTKSingleUnsure
BioFTKSingleVariation
BioFTKSingleVRegion
BioFTKSingleVSegment
BioFTLBaseRange
BioFTLSingleBase
BioFTLSingleBaseRange
BioFTLSingleSite
BioFTQAllele
BioFTQAntiCodon
BioFTQBoundMoiety
BioFTQCellLine
BioFTQCellType
BioFTQChromosome
BioFTQCitation
BioFTQClone
BioFTQCloneLib
BioFTQCodon
BioFTQCodonStart
BioFTQCompare
BioFTQConsSplice
BioFTQCountry
BioFTQCultivar
BioFTQDbXref
BioFTQDevStage
BioFTQDirection
BioFTQECNumber
BioFTQEcotype
BioFTQEstimatedLength
BioFTQEvidence
BioFTQException
BioFTQFrequency
BioFTQFunction
BioFTQGene
BioFTQHaplotype
BioFTQInsertionSeq
BioFTQIsolate
BioFTQIsolationSource
BioFTQLabel
BioFTQLabHost
BioFTQLocusTag
BioFTQMap
BioFTQModBase
BioFTQMolType
BioFTQNote
BioFTQNumber
BioFTQOldLocusTag
BioFTQOperon
BioFTQOrganelle
BioFTQOrganism
BioFTQPCRConditions
BioFTQPhenotype
BioFTQPlasmid
BioFTQPopVariant
BioFTQProduct
BioFTQProteinId
BioFTQReplace
BioFTQRptFamily
BioFTQRptType
BioFTQRptUnit
BioFTQSegment
BioFTQSequencedMol
BioFTQSerotype
BioFTQSerovar
BioFTQSex
BioFTQSingleDbXref
BioFTQSpecificHost
BioFTQSpecimenVoucher
BioFTQStandardName
BioFTQStrain
BioFTQSubClone
BioFTQSubSpecies
BioFTQSubStrain
BioFTQTissueLib
BioFTQTissueType
BioFTQTranslation
BioFTQTranslExcept
BioFTQTranslTable
BioFTQTransposon
BioFTQUsedIn
BioFTQVariety
BioGde
BioGenBank
BioGenBankAccession
BioGenBankDefinition
BioGenBankFeatures
BioGenBankKeywords
BioGenBankLocus
BioGenBankSequence
BioGenBankSource
BioGenBankVersion
BioGenePrediction
BioGraph
BioHelperClass
BioHkl
BioHmm
BioHtml
BioLenPos
BioMatrix
BioMsf
BioMultipleEmbl
BioMultipleFasta
BioMultipleGenBank
BioMultiplePir
BioMultiplePubmed
BioMultipleSequenceAlignment
BioMultipleSequences
BioMultipleSwissProt
BioNucleicAcid
BioNucleicAcidLibrary
BioOutputStream
BioPdb
BioPdbCompnd
BioPdbCryst1
BioPdbDbref
BioPdbExpdta
BioPdbHeader
BioPdbHelix
BioPdbKeywds
BioPdbModres
BioPdbOrigxn
BioPdbRemark2
BioPdbRemark465
BioPdbScalen
BioPdbSeqres
BioPdbSheet
BioPdbSingleCompnd
BioPdbSingleRemark
BioPdbSingleSource
BioPdbSource
BioPdbStrand
BioPdbTitle
BioPdbTurn
BioPoint
BioPostScript
BioPPINetwork
BioProbeSet
BioProtein
BioProteinChain
BioProteinDisorderPrediction
BioProteinMultiPatternAlignment
BioProteinMultipleSequenceAlignment
BioProteinSecondaryStructureAlignment
BioProteinSecondaryStructurePrediction
BioProteinSequence
BioProteinSequenceAlignment
BioProteinSequenceDotPlot
BioProteinSequenceGlobalAlignment
BioProteinSequenceLocalAlignment
BioProteinSequenceRepeatAlignment
BioProteinStructureAlignment
BioProteinSubstitutionMatrix
BioPsimiTab
BioPsiTabDbref
BioPsiTabInteraction
BioPsiTabInteractionConfidenceScore
BioPsiTabInteractionDetectionMethod
BioPsiTabInteractionLiteratureReference
BioPsiTabInteractionSourceDb
BioPsiTabInteractionType
BioPsiTabInteractor
BioPsiTabInteractorAlias
BioPsiTabInteractorAlternateId
BioPsiTabInteractorTaxonId
BioPsiTabInteractorUniqueId
BioPubmed
BioPubmedAb
BioPubmedAd
BioPubmedAid
BioPubmedAu
BioPubmedCi
BioPubmedDa
BioPubmedDcom
BioPubmedDep
BioPubmedDp
BioPubmedEdat
BioPubmedFau
BioPubmedGr
BioPubmedIp
BioPubmedIs
BioPubmedJid
BioPubmedLa
BioPubmedLr
BioPubmedMh
BioPubmedMhda
BioPubmedOwn
BioPubmedPg
BioPubmedPhst
BioPubmedPl
BioPubmedPmid
BioPubmedPst
BioPubmedPt
BioPubmedRf
BioPubmedRn
BioPubmedSb
BioPubmedSi
BioPubmedSingleAid
BioPubmedSingleAu
BioPubmedSingleFau
BioPubmedSingleGr
BioPubmedSingleMh
BioPubmedSinglePhst
BioPubmedSinglePt
BioPubmedSingleRn
BioPubmedSingleSb
BioPubmedSingleSi
BioPubmedSo
BioPubmedStat
BioPubmedTa
BioPubmedTi
BioPubmedTt
BioPubmedVi
BioRaw
BioResidue
BioRestrictionEnzymeLibrary
BioRestrictionMap
BioSampleSet
BioScop171
BioScopClass
BioScopDomainEntry
BioScopFamily
BioScopFold
BioScopProteinDomain
BioScopSpecies
BioScopSuperFamily
BioSecondaryStructure
BioSequence
BioSif
BioSifInteraction
BioSingleBlast
BioSocket
BioSocketAddress
BioSocketAddressIn
BioSocketListener< T >
BioSoftDataSet
BioSpaceGroup
BioSpaceGroupLibrary
BioStatistics
BioSwissProt
BioSwissProtAc
BioSwissProtCc
BioSwissProtCcAllergen
BioSwissProtCcAlternativeProducts
BioSwissProtCcBioTechnology
BioSwissProtCcCatalyticActivity
BioSwissProtCcCaution
BioSwissProtCcCoFactor
BioSwissProtCcDatabase
BioSwissProtCcDevelopmentalStage
BioSwissProtCcDisease
BioSwissProtCcDomain
BioSwissProtCcEnzymeRegulation
BioSwissProtCcFunction
BioSwissProtCcInduction
BioSwissProtCcMassSpectrometry
BioSwissProtCcMiscellaneous
BioSwissProtCcPathWay
BioSwissProtCcPharmaceutical
BioSwissProtCcPolymorphism
BioSwissProtCcPtm
BioSwissProtCcRnaEditing
BioSwissProtCcSimilarity
BioSwissProtCcSubCellularLocation
BioSwissProtCcSubUnit
BioSwissProtCcTissueSpecificity
BioSwissProtDe
BioSwissProtDr
BioSwissProtDt
BioSwissProtFt
BioSwissProtGn
BioSwissProtId
BioSwissProtKw
BioSwissProtOc
BioSwissProtOg
BioSwissProtOs
BioSwissProtOx
BioSwissProtRa
BioSwissProtRc
BioSwissProtReference
BioSwissProtRg
BioSwissProtRl
BioSwissProtRn
BioSwissProtRp
BioSwissProtRt
BioSwissProtRx
BioSwissProtSequence
BioSwissProtSingleDr
BioSwissProtSingleReference
BioSwissProtSq
BioSwptFTKSingleActSite
BioSwptFTKSingleBinding
BioSwptFTKSingleCaBind
BioSwptFTKSingleCarbohyd
BioSwptFTKSingleChain
BioSwptFTKSingleConflict
BioSwptFTKSingleCrossLnk
BioSwptFTKSingleDiSulfid
BioSwptFTKSingleDnaBind
BioSwptFTKSingleDomain
BioSwptFTKSingleHelix
BioSwptFTKSingleInitMet
BioSwptFTKSingleLipid
BioSwptFTKSingleMetal
BioSwptFTKSingleModRes
BioSwptFTKSingleMutagen
BioSwptFTKSingleNonCons
BioSwptFTKSingleNonTer
BioSwptFTKSingleNpBind
BioSwptFTKSinglePeptide
BioSwptFTKSinglePropep
BioSwptFTKSingleRepeat
BioSwptFTKSingleSeCys
BioSwptFTKSingleSignal
BioSwptFTKSingleSite
BioSwptFTKSingleStrand
BioSwptFTKSingleTransit
BioSwptFTKSingleTransMem
BioSwptFTKSingleTurn
BioSwptFTKSingleUnsure
BioSwptFTKSingleVariant
BioSwptFTKSingleVarSplic
BioSwptFTKSingleZnFing
BioSymmetryOperators
BioSymmetryUnitVector
BioTime
BioUpgma
BioUrl
BioWater
BioWordHit
branch
CalphaAtom
coord
dp_matrix
node
sequence_info