BioSecondaryStructure Class Reference

#include <BioSecondaryStructure.h>

Inheritance diagram for BioSecondaryStructure:

List of all members.

Public Member Functions
	BioSecondaryStructure (const string &)
int	getNumberOfSheets ()
int	getNumberOfHelices ()
int	getNumberOfTurns ()
int	getNumberOfHelices (char chai_id)
int	getNumberOfTurns (char chai_id)
int	getNumberOfHelices (int index)
int	getNumberOfTurns (int index)
char	getSecondaryStructureChainId (int index)
int	getNumberOfSecondaryStructureChainIds ()
void	getSheetDirectionCosines (int)
void	showHelixDirectionCosines (int)
void	showHelixDirectionCosines (BioProteinChain &, int)
vector< BioMatrix >	getHelixDirectionCosines ()
void	showSheetIds (ostream &=cout)
void	showHelixIds (ostream &=cout)
void	showTurnIds (ostream &=cout)
int	getHelixIdIndex (const string &)
int	getTurnIdIndex (const string &)
int	getSheetIdIndex (const string &)
BioPdbHelix	getHelix (char ch_id, int helix_index)
BioPdbTurn	getTurn (char ch_id, int)
BioPdbSheet	getSheet (int)
BioPdbHelix	getHelix (int ch_id_index, int helix_index)
BioPdbTurn	getTurn (int ch_id_index, int turn_index)
void	showAllHelixSequences (ostream &=cout)
string	getHelixSequence (int index)
void	showAllTurnSequences (ostream &=cout)
string	getTurnSequence (int index)
void	showAllSheetSequences (ostream &=cout)
string	getSheetSequence (int shIndex, int strIndex)
void	showSecondaryStructure (int index, BioPostScript &ps, float startx=50, float starty=800, float width=475)
void	showSecondaryStructure (char index, BioPostScript &ps, float startx=50, float starty=800, float width=475)
string	getSecondaryStructureSequence (int index)
string	getSecondaryStructureSequence (char chainID)

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Constructor & Destructor Documentation

BioSecondaryStructure::BioSecondaryStructure

(

const string &

)

---

Member Function Documentation

BioPdbHelix BioSecondaryStructure::getHelix	(	char	ch_id,
		int	helix_index
	)

BioPdbHelix BioSecondaryStructure::getHelix	(	int	ch_id_index,
		int	helix_index
	)

vector<BioMatrix> BioSecondaryStructure::getHelixDirectionCosines

(

)

int BioSecondaryStructure::getHelixIdIndex

(

const string &

)

string BioSecondaryStructure::getHelixSequence

(

int

index

)

int BioSecondaryStructure::getNumberOfHelices

(

)

int BioSecondaryStructure::getNumberOfHelices

(

char

chai_id

)

int BioSecondaryStructure::getNumberOfHelices

(

int

index

)

int BioSecondaryStructure::getNumberOfSecondaryStructureChainIds

(

)

int BioSecondaryStructure::getNumberOfSheets

(

)

int BioSecondaryStructure::getNumberOfTurns

(

)

int BioSecondaryStructure::getNumberOfTurns

(

char

chai_id

)

int BioSecondaryStructure::getNumberOfTurns

(

int

index

)

char BioSecondaryStructure::getSecondaryStructureChainId

(

int

index

)

string BioSecondaryStructure::getSecondaryStructureSequence

(

int

index

)

string BioSecondaryStructure::getSecondaryStructureSequence

(

char

chainID

)

BioPdbSheet BioSecondaryStructure::getSheet

(

int

)

void BioSecondaryStructure::getSheetDirectionCosines

(

int

)

int BioSecondaryStructure::getSheetIdIndex

(

const string &

)

string BioSecondaryStructure::getSheetSequence	(	int	shIndex,
		int	strIndex
	)

BioPdbTurn BioSecondaryStructure::getTurn	(	char	ch_id,
		int
	)

BioPdbTurn BioSecondaryStructure::getTurn	(	int	ch_id_index,
		int	turn_index
	)

int BioSecondaryStructure::getTurnIdIndex

(

const string &

)

string BioSecondaryStructure::getTurnSequence

(

int

index

)

void BioSecondaryStructure::showAllHelixSequences

(

ostream &

= cout

)

void BioSecondaryStructure::showAllSheetSequences

(

ostream &

= cout

)

void BioSecondaryStructure::showAllTurnSequences

(

ostream &

= cout

)

void BioSecondaryStructure::showHelixDirectionCosines

(

int

)

void BioSecondaryStructure::showHelixDirectionCosines	(	BioProteinChain &	,
		int
	)

void BioSecondaryStructure::showHelixIds

(

ostream &

= cout

)

void BioSecondaryStructure::showSecondaryStructure	(	int	index,
		BioPostScript &	ps,
		float	startx = 50,
		float	starty = 800,
		float	width = 475
	)

void BioSecondaryStructure::showSecondaryStructure	(	char	index,
		BioPostScript &	ps,
		float	startx = 50,
		float	starty = 800,
		float	width = 475
	)

void BioSecondaryStructure::showSheetIds

(

ostream &

= cout

)

void BioSecondaryStructure::showTurnIds

(

ostream &

= cout

)

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The documentation for this class was generated from the following file:

• BioSecondaryStructure.h