BioGraph Class Reference

#include <BioGraph.h>

Inheritance diagram for BioGraph:

List of all members.

Public Member Functions
	BioGraph ()
	BioGraph (vector< string > nids, int **adj)
BioGraph &	operator= (BioGraph &g)
void	setGraph (vector< string > nids, int **adj)
void	setNodeIds (vector< string > nids)
void	setNodeId (int index, string s)
void	setAdjacencyMatrix (int **adj)
int **	getAdjacencyMatrix ()
vector< string >	getNodeIds ()
string	getNodeId (int i)
long	getNodeIdIndex (string s)
int	getNumberOfEdges ()
long	getNumberOfNodes ()
bool	isNeighbor (string n1, string n2)
bool	isNeighbor (long n1in, long n2in)
int	getNumberOfNodeEdges (string nid)
void	showAdjacencyMatrix (ostream &=cout)
vector< string >	getNeighborNodeIds (string n)
float	getClusteringCoefficient (string nid)
float	getAverageClusteringCoefficient ()
void	addEdge (string n1, string n2)
void	deleteEdge (string n1, string n2)
void	addNode (string n1)
void	deleteNode (string n1)
int	getNumberOfSharedNeighbors (string n1, string n2)
vector< string >	getSharedNeighborIds (string n1, string n2)
float	getTopologicalCoefficient (string ni)
vector< int >	getNodeDistances (string n1)
int	getNodeDistance (string n1, string n2)

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Constructor & Destructor Documentation

BioGraph::BioGraph

(

)

BioGraph::BioGraph	(	vector< string >	nids,
		int **	adj
	)

---

Member Function Documentation

void BioGraph::addEdge	(	string	n1,
		string	n2
	)

void BioGraph::addNode

(

string

n1

)

void BioGraph::deleteEdge	(	string	n1,
		string	n2
	)

void BioGraph::deleteNode

(

string

n1

)

int** BioGraph::getAdjacencyMatrix

(

)

float BioGraph::getAverageClusteringCoefficient

(

)

float BioGraph::getClusteringCoefficient

(

string

nid

)

vector<string> BioGraph::getNeighborNodeIds

(

string

n

)

int BioGraph::getNodeDistance	(	string	n1,
		string	n2
	)

vector<int> BioGraph::getNodeDistances

(

string

n1

)

string BioGraph::getNodeId

(

int

i

)

long BioGraph::getNodeIdIndex

(

string

s

)

vector<string> BioGraph::getNodeIds

(

)

int BioGraph::getNumberOfEdges

(

)

int BioGraph::getNumberOfNodeEdges

(

string

nid

)

long BioGraph::getNumberOfNodes

(

)

int BioGraph::getNumberOfSharedNeighbors	(	string	n1,
		string	n2
	)

vector<string> BioGraph::getSharedNeighborIds	(	string	n1,
		string	n2
	)

float BioGraph::getTopologicalCoefficient

(

string

ni

)

bool BioGraph::isNeighbor	(	string	n1,
		string	n2
	)

bool BioGraph::isNeighbor	(	long	n1in,
		long	n2in
	)

BioGraph& BioGraph::operator=

(

BioGraph &

g

)

void BioGraph::setAdjacencyMatrix

(

int **

adj

)

void BioGraph::setGraph	(	vector< string >	nids,
		int **	adj
	)

void BioGraph::setNodeId	(	int	index,
		string	s
	)

void BioGraph::setNodeIds

(

vector< string >

nids

)

void BioGraph::showAdjacencyMatrix

(

ostream &

= cout

)

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The documentation for this class was generated from the following file:

• BioGraph.h