BioDataSet Class Reference

#include <BioDataSet.h>

Inheritance diagram for BioDataSet:

List of all members.

Public Member Functions
	BioDataSet (vector< string > &sampleNames, vector< BioProbeSet > &prbData)
BioProbeSet	getProbeSet (int probeIndex)
BioProbeSet	getAverageOfProbeSets (string probeIndexPattern)
int	getNumberOfSamples ()
int	getNumberOfProbes ()
int	getSampleIndex (string sampleName)
int	getProbeIndex (string probeReference)
BioSampleSet	getSampleSet (int sampleIndex)
BioSampleSet	getAverageOfSampleSets (string sampleIndexPattern)
BioDataSet	getMultipleProbeSets (string indexString)
BioDataSet	getMultipleSampleSets (string indexString)
float	getSampleRMSD (int sampleIndex1, int sampleIndex2)
float	getProbeRMSD (int probeIndex1, int probeIndex2)
float	getProbeCorrelationCoefficient (int probeIndex1, int probeIndex2)
float	getSampleCorrelationCoefficient (int sampleIndex1, int sampleIndex2)
vector< int >	getProbeIndexListExcludingAllNullProbes ()
vector< int >	getControlProbeIndexList ()
vector< int >	getAllNullProbeIndexList ()
vector< int >	getCleanProbeIndexList ()
vector< int >	getAllNullSampleIndexList ()
vector< int >	getCleanSampleIndexList ()
BioDataSet	getNormalizedDataSet ()
float	getMean ()
float	getMaximum ()
float	getMinimum ()
float	getStandardDeviation ()
float	getMedian ()
BioDataSet	getCleanDataSet ()
BioDataSet	getDataSetExcludingControlProbes ()
Protected Member Functions
	BioDataSet ()
Protected Attributes
vector< BioProbeSet >	probeData_
vector< string >	sampleNames_

---

Constructor & Destructor Documentation

BioDataSet::BioDataSet

(

)

[protected]

BioDataSet::BioDataSet	(	vector< string > &	sampleNames,
		vector< BioProbeSet > &	prbData
	)

---

Member Function Documentation

vector<int> BioDataSet::getAllNullProbeIndexList

(

)

vector<int> BioDataSet::getAllNullSampleIndexList

(

)

BioProbeSet BioDataSet::getAverageOfProbeSets

(

string

probeIndexPattern

)

BioSampleSet BioDataSet::getAverageOfSampleSets

(

string

sampleIndexPattern

)

BioDataSet BioDataSet::getCleanDataSet

(

)

vector<int> BioDataSet::getCleanProbeIndexList

(

)

vector<int> BioDataSet::getCleanSampleIndexList

(

)

vector<int> BioDataSet::getControlProbeIndexList

(

)

BioDataSet BioDataSet::getDataSetExcludingControlProbes

(

)

float BioDataSet::getMaximum

(

)

float BioDataSet::getMean

(

)

float BioDataSet::getMedian

(

)

float BioDataSet::getMinimum

(

)

BioDataSet BioDataSet::getMultipleProbeSets

(

string

indexString

)

BioDataSet BioDataSet::getMultipleSampleSets

(

string

indexString

)

BioDataSet BioDataSet::getNormalizedDataSet

(

)

int BioDataSet::getNumberOfProbes

(

)

int BioDataSet::getNumberOfSamples

(

)

float BioDataSet::getProbeCorrelationCoefficient	(	int	probeIndex1,
		int	probeIndex2
	)

int BioDataSet::getProbeIndex

(

string

probeReference

)

vector<int> BioDataSet::getProbeIndexListExcludingAllNullProbes

(

)

float BioDataSet::getProbeRMSD	(	int	probeIndex1,
		int	probeIndex2
	)

BioProbeSet BioDataSet::getProbeSet

(

int

probeIndex

)

float BioDataSet::getSampleCorrelationCoefficient	(	int	sampleIndex1,
		int	sampleIndex2
	)

int BioDataSet::getSampleIndex

(

string

sampleName

)

float BioDataSet::getSampleRMSD	(	int	sampleIndex1,
		int	sampleIndex2
	)

BioSampleSet BioDataSet::getSampleSet

(

int

sampleIndex

)

float BioDataSet::getStandardDeviation

(

)

---

Member Data Documentation

vector<BioProbeSet> BioDataSet::probeData_ [protected]

vector<string> BioDataSet::sampleNames_ [protected]

---

The documentation for this class was generated from the following file:

• BioDataSet.h