BioDnaSequence Class Reference

#include <BioDnaSequence.h>

Inheritance diagram for BioDnaSequence:

Collaboration diagram for BioDnaSequence:

List of all members.

Public Member Functions
	BioDnaSequence (const string &)
	BioDnaSequence ()
	BioDnaSequence (const string &seqnam, const string &seq)
	~BioDnaSequence ()
bool	checkDnaSequence ()
void	setSequence (const string &seqnam, const string &seq)
void	setSequenceName (const string &seqnam)
void	setSequence (const string &seq)
string	getTranslatedSequence (const int &frameNumber)
string	getTranslatedSequence (const long &, const long &, const int &frameNumber)
void	showTranslatedSequences (ostream &os=cout)
void	showTranslatedSequences (const long &, const long &, ostream &os=cout)
void	showTranslatedSequences (BioHtml &)
void	showTranslatedSequences (BioPostScript &, int startX=75, int startY=200, int len=400)
string	getmRnaSequence ()
string	getComplementarySequence ()
string	getmRnaSequence (const long &, const long &)
string	getComplementarySequence (const long &, const long &)
string	getBase (const long &)
double	getMolecularWeight ()
double	getPercentGC ()
double	getPercentAT ()
double	getTm ()

---

Constructor & Destructor Documentation

BioDnaSequence::BioDnaSequence

(

const string &

)

BioDnaSequence::BioDnaSequence

(

)

BioDnaSequence::BioDnaSequence	(	const string &	seqnam,
		const string &	seq
	)

BioDnaSequence::~BioDnaSequence

(

)

---

Member Function Documentation

bool BioDnaSequence::checkDnaSequence

(

)

string BioDnaSequence::getBase

(

const long &

)

string BioDnaSequence::getComplementarySequence

(

)

string BioDnaSequence::getComplementarySequence	(	const long &	,
		const long &
	)

double BioDnaSequence::getMolecularWeight

(

)

string BioDnaSequence::getmRnaSequence

(

)

string BioDnaSequence::getmRnaSequence	(	const long &	,
		const long &
	)

double BioDnaSequence::getPercentAT

(

)

double BioDnaSequence::getPercentGC

(

)

double BioDnaSequence::getTm

(

)

string BioDnaSequence::getTranslatedSequence

(

const int &

frameNumber

)

string BioDnaSequence::getTranslatedSequence	(	const long &	,
		const long &	,
		const int &	frameNumber
	)

void BioDnaSequence::setSequence	(	const string &	seqnam,
		const string &	seq
	)

Reimplemented from BioSequence.

void BioDnaSequence::setSequence

(

const string &

seq

)

Reimplemented from BioSequence.

void BioDnaSequence::setSequenceName

(

const string &

seqnam

)

Reimplemented from BioSequence.

void BioDnaSequence::showTranslatedSequences

(

ostream &

os = cout

)

void BioDnaSequence::showTranslatedSequences	(	const long &	,
		const long &	,
		ostream &	os = cout
	)

void BioDnaSequence::showTranslatedSequences

(

BioHtml &

)

void BioDnaSequence::showTranslatedSequences	(	BioPostScript &	,
		int	startX = 75,
		int	startY = 200,
		int	len = 400
	)

---

The documentation for this class was generated from the following file:

• BioDnaSequence.h