BioProteinSequence Class Reference

#include <BioProteinSequence.h>

Inheritance diagram for BioProteinSequence:

Collaboration diagram for BioProteinSequence:

List of all members.

Public Member Functions
	BioProteinSequence (const string &)
	BioProteinSequence ()
	BioProteinSequence (const string &seqnam, const string &seq)
bool	checkProteinSequence ()
void	setSequence (const string &seqnam, const string &seq)
double	getMolecularWeight ()
string	getAminoAcid (const long &)
double	getMolarExtinctionCoefficient ()
double	getExtinctionCoefficient ()
double	getProteinConcentration (double absorption)
int	getNumberOfBasicAminoAcids ()
int	getNumberOfAcidicAminoAcids ()
int	getNumberOfPolarAminoAcids ()
int	getNumberOfNonPolarAminoAcids ()
vector< long >	getPositionsOfBasicAminoAcids ()
vector< long >	getPositionsOfAcidicAminoAcids ()
vector< long >	getPositionsOfPolarAminoAcids ()
vector< long >	getPositionsOfNonPolarAminoAcids ()
void	showPositionsOfBasicAminoAcids (ostream &os=cout)
void	showPositionsOfAcidicAminoAcids (ostream &os=cout)
void	showPositionsOfPolarAminoAcids (ostream &os=cout)
void	showPositionsOfNonPolarAminoAcids (ostream &os=cout)
void	showHydropathyPlot (const int &windowSize, BioPostScript &ps)

---

Constructor & Destructor Documentation

BioProteinSequence::BioProteinSequence

(

const string &

)

BioProteinSequence::BioProteinSequence

(

)

BioProteinSequence::BioProteinSequence	(	const string &	seqnam,
		const string &	seq
	)

---

Member Function Documentation

bool BioProteinSequence::checkProteinSequence

(

)

string BioProteinSequence::getAminoAcid

(

const long &

)

double BioProteinSequence::getExtinctionCoefficient

(

)

double BioProteinSequence::getMolarExtinctionCoefficient

(

)

double BioProteinSequence::getMolecularWeight

(

)

int BioProteinSequence::getNumberOfAcidicAminoAcids

(

)

int BioProteinSequence::getNumberOfBasicAminoAcids

(

)

int BioProteinSequence::getNumberOfNonPolarAminoAcids

(

)

int BioProteinSequence::getNumberOfPolarAminoAcids

(

)

vector<long > BioProteinSequence::getPositionsOfAcidicAminoAcids

(

)

vector<long > BioProteinSequence::getPositionsOfBasicAminoAcids

(

)

vector<long > BioProteinSequence::getPositionsOfNonPolarAminoAcids

(

)

vector<long > BioProteinSequence::getPositionsOfPolarAminoAcids

(

)

double BioProteinSequence::getProteinConcentration

(

double

absorption

)

void BioProteinSequence::setSequence	(	const string &	seqnam,
		const string &	seq
	)

Reimplemented from BioSequence.

void BioProteinSequence::showHydropathyPlot	(	const int &	windowSize,
		BioPostScript &	ps
	)

void BioProteinSequence::showPositionsOfAcidicAminoAcids

(

ostream &

os = cout

)

void BioProteinSequence::showPositionsOfBasicAminoAcids

(

ostream &

os = cout

)

void BioProteinSequence::showPositionsOfNonPolarAminoAcids

(

ostream &

os = cout

)

void BioProteinSequence::showPositionsOfPolarAminoAcids

(

ostream &

os = cout

)

---

The documentation for this class was generated from the following file:

• BioProteinSequence.h