, including all inherited members.
| BioProteinSequence(const string &) | BioProteinSequence | |
| BioProteinSequence() | BioProteinSequence | |
| BioProteinSequence(const string &seqnam, const string &seq) | BioProteinSequence | |
| BioSequence() | BioSequence | |
| BioSequence(const string &filename) | BioSequence | |
| BioSequence(const string &seqnam, const string &seq) | BioSequence | |
| checkProteinSequence() | BioProteinSequence | |
| checkSequence() | BioSequence | |
| find(const string &words) | BioSequence | |
| findPattern(const string &pat) | BioSequence | |
| getAminoAcid(const long &) | BioProteinSequence | |
| getDeletedSequence(const long &, const long &) | BioSequence | |
| getExtinctionCoefficient() | BioProteinSequence | |
| getInsertedSequence(const long &, const string &) | BioSequence | |
| getMolarExtinctionCoefficient() | BioProteinSequence | |
| getMolecularWeight() | BioProteinSequence | |
| getMutatedSequence(const long &, const char &) | BioSequence | |
| getMutatedSequence(const long &, const string &) | BioSequence | |
| getMutatedSequence(const char &, const char &) | BioSequence | |
| getMutatedSequence(const string &, const string &) | BioSequence | |
| getMutatedSequence(const long &, const long &, const string &) | BioSequence | |
| getMutatedSequence(string &s1) | BioSequence | |
| getNumberOfAcidicAminoAcids() | BioProteinSequence | |
| getNumberOfBasicAminoAcids() | BioProteinSequence | |
| getNumberOfNonPolarAminoAcids() | BioProteinSequence | |
| getNumberOfOccurrences(const char &ch) | BioSequence | |
| getNumberOfOccurrences(const string &pattern) | BioSequence | |
| getNumberOfPolarAminoAcids() | BioProteinSequence | |
| getNumberOfSSRs(const string &pat, const int &repeats) | BioSequence | |
| getPositionsOfAcidicAminoAcids() | BioProteinSequence | |
| getPositionsOfBasicAminoAcids() | BioProteinSequence | |
| getPositionsOfNonPolarAminoAcids() | BioProteinSequence | |
| getPositionsOfPattern(const string &pat) | BioSequence | |
| getPositionsOfPolarAminoAcids() | BioProteinSequence | |
| getPositionsOfSSRs(const string &pat, const int &repeats) | BioSequence | |
| getProteinConcentration(double absorption) | BioProteinSequence | |
| getSequence() const | BioSequence | |
| getSequenceLength() const | BioSequence | |
| getSequenceName() const | BioSequence | |
| getSequenceSegment(const long &a, const long &b) | BioSequence | |
| getShuffledSequence() | BioSequence | |
| readFasta(ifstream &) | BioSequence | |
| seqname_ | BioSequence | [protected] |
| sequence_ | BioSequence | [protected] |
| setSequence(const string &seqnam, const string &seq) | BioProteinSequence | |
| BioSequence::setSequence(const string &seq) | BioSequence | |
| setSequenceName(const string &seqnam) | BioSequence | |
| showHydropathyPlot(const int &windowSize, BioPostScript &ps) | BioProteinSequence | |
| showInFasta(ostream &=cout) | BioSequence | |
| showPositionsOfAcidicAminoAcids(ostream &os=cout) | BioProteinSequence | |
| showPositionsOfBasicAminoAcids(ostream &os=cout) | BioProteinSequence | |
| showPositionsOfNonPolarAminoAcids(ostream &os=cout) | BioProteinSequence | |
| showPositionsOfPattern(const string &pat, ostream &os=cout) | BioSequence | |
| showPositionsOfPattern(const string &pat, BioPostScript &ps, const int &xpos=100, const int &ypos=650, const int &w=450, const int &h=20) | BioSequence | |
| showPositionsOfPolarAminoAcids(ostream &os=cout) | BioProteinSequence | |
| showShuffledSequence(ostream &os=cout) | BioSequence | |
| showSSRs(const string &pat, const int &repeats, ostream &os=cout) | BioSequence | |
| showSSRs(const string &pat, const int &repeats, BioPostScript &ps, const int &xpos=100, const int &ypos=650, const int &w=450, const int &h=20) | BioSequence | |
1.7.6.1 
