BioProteinSecondaryStructurePrediction Class Reference

#include <BioProteinSecondaryStructurePrediction.h>

List of all members.

Public Member Functions
	BioProteinSecondaryStructurePrediction ()
	BioProteinSecondaryStructurePrediction (BioRaw &)
	BioProteinSecondaryStructurePrediction (BioFasta &)
	BioProteinSecondaryStructurePrediction (BioProteinSequence &)
	BioProteinSecondaryStructurePrediction (BioSwissProt &)
	BioProteinSecondaryStructurePrediction (const string &)
void	showPrediction (ostream &=cout)
void	showHelixPrediction (ostream &=cout)
void	showStrandPrediction (ostream &=cout)
void	showTurnPrediction (ostream &=cout)
int	getNumberOfHelices ()
int	getNumberOfStrands ()
int	getNumberOfTurns ()
string	getPredictedSequence ()
string	getHelix (int i)
string	getStrand (int i)
string	getTurn (int i)
void	setHelixNucleationParameters (int window, int num)
void	setSheetNucleationParameters (int window, int num)
void	setHelixExtensionParameter (float param)
void	setSheetExtensionParamater (float param)
void	showPrediction (BioPostScript &ps, float startx=50, float starty=800, float width=475)
void	showHelixPrediction (BioPostScript &ps, float startx=50, float starty=800, float width=475)
void	showStrandPrediction (BioPostScript &ps, float startx=50, float starty=800, float width=475)
void	showTurnPrediction (BioPostScript &ps, float startx=50, float starty=800, float width=475)
Friends
bool	operator> (const BioProteinSecondaryStructurePrediction &, const BioProteinSecondaryStructurePrediction &)
bool	operator< (const BioProteinSecondaryStructurePrediction &, const BioProteinSecondaryStructurePrediction &)
bool	operator== (const BioProteinSecondaryStructurePrediction &, const BioProteinSecondaryStructurePrediction &)

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Constructor & Destructor Documentation

BioProteinSecondaryStructurePrediction::BioProteinSecondaryStructurePrediction

(

)

[inline]

BioProteinSecondaryStructurePrediction::BioProteinSecondaryStructurePrediction

(

BioRaw &

)

BioProteinSecondaryStructurePrediction::BioProteinSecondaryStructurePrediction

(

BioFasta &

)

BioProteinSecondaryStructurePrediction::BioProteinSecondaryStructurePrediction

(

BioProteinSequence &

)

BioProteinSecondaryStructurePrediction::BioProteinSecondaryStructurePrediction

(

BioSwissProt &

)

BioProteinSecondaryStructurePrediction::BioProteinSecondaryStructurePrediction

(

const string &

)

---

Member Function Documentation

string BioProteinSecondaryStructurePrediction::getHelix

(

int

i

)

int BioProteinSecondaryStructurePrediction::getNumberOfHelices

(

)

int BioProteinSecondaryStructurePrediction::getNumberOfStrands

(

)

int BioProteinSecondaryStructurePrediction::getNumberOfTurns

(

)

string BioProteinSecondaryStructurePrediction::getPredictedSequence

(

)

string BioProteinSecondaryStructurePrediction::getStrand

(

int

i

)

string BioProteinSecondaryStructurePrediction::getTurn

(

int

i

)

void BioProteinSecondaryStructurePrediction::setHelixExtensionParameter

(

float

param

)

void BioProteinSecondaryStructurePrediction::setHelixNucleationParameters	(	int	window,
		int	num
	)

void BioProteinSecondaryStructurePrediction::setSheetExtensionParamater

(

float

param

)

void BioProteinSecondaryStructurePrediction::setSheetNucleationParameters	(	int	window,
		int	num
	)

void BioProteinSecondaryStructurePrediction::showHelixPrediction

(

ostream &

= cout

)

void BioProteinSecondaryStructurePrediction::showHelixPrediction	(	BioPostScript &	ps,
		float	startx = 50,
		float	starty = 800,
		float	width = 475
	)

void BioProteinSecondaryStructurePrediction::showPrediction

(

ostream &

= cout

)

void BioProteinSecondaryStructurePrediction::showPrediction	(	BioPostScript &	ps,
		float	startx = 50,
		float	starty = 800,
		float	width = 475
	)

void BioProteinSecondaryStructurePrediction::showStrandPrediction

(

ostream &

= cout

)

void BioProteinSecondaryStructurePrediction::showStrandPrediction	(	BioPostScript &	ps,
		float	startx = 50,
		float	starty = 800,
		float	width = 475
	)

void BioProteinSecondaryStructurePrediction::showTurnPrediction

(

ostream &

= cout

)

void BioProteinSecondaryStructurePrediction::showTurnPrediction	(	BioPostScript &	ps,
		float	startx = 50,
		float	starty = 800,
		float	width = 475
	)

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Friends And Related Function Documentation

bool operator<	(	const BioProteinSecondaryStructurePrediction &	,
		const BioProteinSecondaryStructurePrediction &
	)		[friend]

bool operator==	(	const BioProteinSecondaryStructurePrediction &	,
		const BioProteinSecondaryStructurePrediction &
	)		[friend]

bool operator>	(	const BioProteinSecondaryStructurePrediction &	,
		const BioProteinSecondaryStructurePrediction &
	)		[friend]

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The documentation for this class was generated from the following file:

• BioProteinSecondaryStructurePrediction.h