Inheritance diagram for BioMultipleSequenceAlignment:

Public Member Functions
	BioMultipleSequenceAlignment ()
	BioMultipleSequenceAlignment (BioMultipleFasta &)
	BioMultipleSequenceAlignment (BioMultipleGenBank &)
	BioMultipleSequenceAlignment (BioMultipleEmbl &)
	BioMultipleSequenceAlignment (BioMultipleSwissProt &)
void	showAlignment (ostream &=cout)
string	getAlignedSequence (int i)
vector< string >	getAlignedSequences ()
string	getAlignedSequenceName (int i)
BioFasta	getAlignedSequenceInFasta (int i)
BioMultipleFasta	getAlignedSequencesInMultipleFasta ()
vector< char >	getColumn (int i)
BioMatrix	getProfileMatrix (string s)
int	getColumnScore (int col_index, string s)
vector< int >	getColumnScores (string type)

Constructor & Destructor Documentation

BioMultipleSequenceAlignment::BioMultipleSequenceAlignment ( )

BioMultipleSequenceAlignment::BioMultipleSequenceAlignment ( BioMultipleFasta & )

BioMultipleSequenceAlignment::BioMultipleSequenceAlignment ( BioMultipleGenBank & )

BioMultipleSequenceAlignment::BioMultipleSequenceAlignment ( BioMultipleEmbl & )

BioMultipleSequenceAlignment::BioMultipleSequenceAlignment ( BioMultipleSwissProt & )

Member Function Documentation

string BioMultipleSequenceAlignment::getAlignedSequence ( int i )

BioFasta BioMultipleSequenceAlignment::getAlignedSequenceInFasta ( int i )

string BioMultipleSequenceAlignment::getAlignedSequenceName ( int i )

vector<string> BioMultipleSequenceAlignment::getAlignedSequences ( )

BioMultipleFasta BioMultipleSequenceAlignment::getAlignedSequencesInMultipleFasta ( )

vector<char> BioMultipleSequenceAlignment::getColumn ( int i )

int BioMultipleSequenceAlignment::getColumnScore	(	int	col_index,
		string	s
	)

vector<int> BioMultipleSequenceAlignment::getColumnScores ( string type )

BioMatrix BioMultipleSequenceAlignment::getProfileMatrix ( string s )

void BioMultipleSequenceAlignment::showAlignment ( ostream & = cout )

The documentation for this class was generated from the following file: