BioAtom Class Reference

#include <BioAtom.h>

Inheritance diagram for BioAtom:

Collaboration diagram for BioAtom:

List of all members.

Public Member Functions
	BioAtom ()
	BioAtom (const string &)
	BioAtom (const BioAtom &)
BioAtom &	operator= (const BioAtom &)
	BioAtom (const unsigned long atnum_, const string atname_, const BioPoint &, const float oc1=1.0, const float bf1=15.0, const string atrec="ATOM ")
	BioAtom (const unsigned long atnumber, const string atname, const float x1, const float y1, const float z1, const float oc=1.0, const float bf=15.0, const string atrec="ATOM ")
void	setAtomName (string)
void	setAtomNumber (unsigned long)
void	setBfactor (float)
void	setOccupancy (float)
void	setAtom (const unsigned long atnumber, const string atname, const float x1, const float y1, const float z1, const float oc=1.0, const float bf=15.0, const string atrec="ATOM ")
string	getAtomName () const
unsigned long	getAtomNumber () const
float	getBfactor () const
float	getOccupancy () const
string	getAtomRecord () const
void	showAtom (ostream &=cout, string="AAA", int=0, char='A')
BioAtom	getRotatedAtom (const float **a_)
BioAtom	getRotatedAtom (const float a_, const char axis_)
BioAtom	getTranslatedAtom (const float *a_)
BioAtom	getRotoTranslatedAtom (const float **a_, const float *b_)
BioAtom	getRotoTranslatedAtom (const float a_, const char axis_, const float *b_)
Friends
bool	operator> (const BioAtom &, const BioAtom &)
bool	operator< (const BioAtom &, const BioAtom &)
bool	operator== (const BioAtom &, const BioAtom &)
ostream &	operator<< (ostream &os, const BioAtom &ip)

---

Constructor & Destructor Documentation

BioAtom::BioAtom

(

)

BioAtom::BioAtom

(

const string &

)

BioAtom::BioAtom

(

const BioAtom &

)

BioAtom::BioAtom	(	const unsigned long	atnum_,
		const string	atname_,
		const BioPoint &	,
		const float	oc1 = 1.0,
		const float	bf1 = 15.0,
		const string	atrec = "ATOM  "
	)

BioAtom::BioAtom	(	const unsigned long	atnumber,
		const string	atname,
		const float	x1,
		const float	y1,
		const float	z1,
		const float	oc = 1.0,
		const float	bf = 15.0,
		const string	atrec = "ATOM  "
	)

---

Member Function Documentation

string BioAtom::getAtomName

(

)

const

unsigned long BioAtom::getAtomNumber

(

)

const

string BioAtom::getAtomRecord

(

)

const

float BioAtom::getBfactor

(

)

const

float BioAtom::getOccupancy

(

)

const

BioAtom BioAtom::getRotatedAtom

(

const float **

a_

)

BioAtom BioAtom::getRotatedAtom	(	const float	a_,
		const char	axis_
	)

BioAtom BioAtom::getRotoTranslatedAtom	(	const float **	a_,
		const float *	b_
	)

BioAtom BioAtom::getRotoTranslatedAtom	(	const float	a_,
		const char	axis_,
		const float *	b_
	)

BioAtom BioAtom::getTranslatedAtom

(

const float *

a_

)

BioAtom& BioAtom::operator=

(

const BioAtom &

)

void BioAtom::setAtom	(	const unsigned long	atnumber,
		const string	atname,
		const float	x1,
		const float	y1,
		const float	z1,
		const float	oc = 1.0,
		const float	bf = 15.0,
		const string	atrec = "ATOM  "
	)

void BioAtom::setAtomName

(

string

)

void BioAtom::setAtomNumber

(

unsigned

long

)

void BioAtom::setBfactor

(

float

)

void BioAtom::setOccupancy

(

float

)

void BioAtom::showAtom	(	ostream &	= cout,
		string	= "AAA",
		int	= 0,
		char	= 'A'
	)

---

Friends And Related Function Documentation

bool operator<	(	const BioAtom &	,
		const BioAtom &
	)		[friend]

ostream& operator<<	(	ostream &	os,
		const BioAtom &	ip
	)		[friend]

bool operator==	(	const BioAtom &	,
		const BioAtom &
	)		[friend]

bool operator>	(	const BioAtom &	,
		const BioAtom &
	)		[friend]

---

The documentation for this class was generated from the following file:

• BioAtom.h