BioRestrictionMap Class Reference

#include <BioRestrictionMap.h>

List of all members.

Public Member Functions
	BioRestrictionMap ()
	BioRestrictionMap (BioDnaSequence dnaSeq, string restrictionEnzymeName)
	BioRestrictionMap (BioFasta obj, string restrictionEnzymeName)
	BioRestrictionMap (BioRaw obj, string restrictionEnzymeName)
	~BioRestrictionMap ()
void	setSequence (BioDnaSequence dnaSeq)
void	setSequence (BioFasta obj)
void	setSequence (BioRaw obj)
void	setRestrictionEnzyme (string restrictionEnzymeName)
void	addRestrictionEnzyme (string restrictionEnzymeName)
int	getNumberOfRestrictionEnzymes ()
string	getRestrictionEnzyme (int indexRE)
int	getRestrictionEnzymeIndex (string REName)
vector< int >	getRestrictedPositions (int indexRE)
vector< int >	getRestrictedPositions (string REs)
void	showRestrictionMap (ostream &fout=cout)
void	showRestrictionMap (string REs, ostream &fout=cout)
void	showRestrictionMap (int indexRE, ostream &fout=cout)
vector< string >	getRestrictionEnzymeList (int occurrences)
vector< string >	getRestrictionEnzymeList (string occurrences)
vector< string >	getRestrictedFragments (int indexRE=0)
vector< string >	getRestrictedFragments (string REs)
int	getNumberOfRestrictedFragments (int indexRE)
int	getNumberOfRestrictedFragments (string REs)
Friends
bool	operator> (const BioRestrictionMap &, const BioRestrictionMap &)
bool	operator< (const BioRestrictionMap &, const BioRestrictionMap &)
bool	operator== (const BioRestrictionMap &, const BioRestrictionMap &)

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Constructor & Destructor Documentation

BioRestrictionMap::BioRestrictionMap

(

)

BioRestrictionMap::BioRestrictionMap	(	BioDnaSequence	dnaSeq,
		string	restrictionEnzymeName
	)

BioRestrictionMap::BioRestrictionMap	(	BioFasta	obj,
		string	restrictionEnzymeName
	)

BioRestrictionMap::BioRestrictionMap	(	BioRaw	obj,
		string	restrictionEnzymeName
	)

BioRestrictionMap::~BioRestrictionMap

(

)

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Member Function Documentation

void BioRestrictionMap::addRestrictionEnzyme

(

string

restrictionEnzymeName

)

int BioRestrictionMap::getNumberOfRestrictedFragments

(

int

indexRE

)

int BioRestrictionMap::getNumberOfRestrictedFragments

(

string

REs

)

int BioRestrictionMap::getNumberOfRestrictionEnzymes

(

)

vector<string> BioRestrictionMap::getRestrictedFragments

(

int

indexRE = 0

)

vector<string> BioRestrictionMap::getRestrictedFragments

(

string

REs

)

vector< int > BioRestrictionMap::getRestrictedPositions

(

int

indexRE

)

vector< int > BioRestrictionMap::getRestrictedPositions

(

string

REs

)

string BioRestrictionMap::getRestrictionEnzyme

(

int

indexRE

)

int BioRestrictionMap::getRestrictionEnzymeIndex

(

string

REName

)

vector<string> BioRestrictionMap::getRestrictionEnzymeList

(

int

occurrences

)

vector<string> BioRestrictionMap::getRestrictionEnzymeList

(

string

occurrences

)

void BioRestrictionMap::setRestrictionEnzyme

(

string

restrictionEnzymeName

)

void BioRestrictionMap::setSequence

(

BioDnaSequence

dnaSeq

)

void BioRestrictionMap::setSequence

(

BioFasta

obj

)

void BioRestrictionMap::setSequence

(

BioRaw

obj

)

void BioRestrictionMap::showRestrictionMap

(

ostream &

fout = cout

)

void BioRestrictionMap::showRestrictionMap	(	string	REs,
		ostream &	fout = cout
	)

void BioRestrictionMap::showRestrictionMap	(	int	indexRE,
		ostream &	fout = cout
	)

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Friends And Related Function Documentation

bool operator<	(	const BioRestrictionMap &	,
		const BioRestrictionMap &
	)		[friend]

bool operator==	(	const BioRestrictionMap &	,
		const BioRestrictionMap &
	)		[friend]

bool operator>	(	const BioRestrictionMap &	,
		const BioRestrictionMap &
	)		[friend]

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The documentation for this class was generated from the following file:

• BioRestrictionMap.h