Public Member Functions
	BioGenePrediction ()
	BioGenePrediction (BioDnaSequence &BioDnaSequenceObject)
	BioGenePrediction (BioGenBank &GenBankObject)
	BioGenePrediction (BioEmbl &EmblObject)
	BioGenePrediction (BioFasta &BioFastaObject)
	BioGenePrediction (BioRaw &)
long	getNumberOfOrfs (int frameNum)
vector< BioSequence >	getOrfs (int frameNum)
long	getNumberOfOrfs (int frameNum, int minSequenceLength, int maxSequenceLength=0)
vector< BioSequence >	getOrfs (int frameNum, int minSequenceLength, int maxSequenceLength=0)
void	showTATABoxes ()
void	showOrfs (int frameNum, ostream &os=cout)
void	showOrfs (int frameNum, int minSequenceLength, int maxSequenceLength=0, ostream &os=cout)

Constructor & Destructor Documentation

BioGenePrediction::BioGenePrediction ( ) [inline]

BioGenePrediction::BioGenePrediction ( BioDnaSequence & BioDnaSequenceObject )

BioGenePrediction::BioGenePrediction ( BioGenBank & GenBankObject )

BioGenePrediction::BioGenePrediction ( BioEmbl & EmblObject )

BioGenePrediction::BioGenePrediction ( BioFasta & BioFastaObject )

BioGenePrediction::BioGenePrediction ( BioRaw & )

Member Function Documentation

long BioGenePrediction::getNumberOfOrfs ( int frameNum )

long BioGenePrediction::getNumberOfOrfs	(	int	frameNum,
		int	minSequenceLength,
		int	maxSequenceLength = `0`
	)

vector<BioSequence> BioGenePrediction::getOrfs ( int frameNum )

vector<BioSequence> BioGenePrediction::getOrfs	(	int	frameNum,
		int	minSequenceLength,
		int	maxSequenceLength = `0`
	)

void BioGenePrediction::showOrfs	(	int	frameNum,
		ostream &	os = `cout`
	)

void BioGenePrediction::showOrfs	(	int	frameNum,
		int	minSequenceLength,
		int	maxSequenceLength = `0`,
		ostream &	os = `cout`
	)

void BioGenePrediction::showTATABoxes ( )

The documentation for this class was generated from the following file: