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BioInt
1.02.00
BioInt: An integrative biological object-oriented application framework and interpreter
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BioInt
1.02.00
BioInt: An integrative biological object-oriented application framework and interpreter
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| BioChain() | BioChain | |
| BioChain(const string &) | BioChain | |
| BioChain(const string &, char) | BioChain | |
| BioChain(const unsigned long &atnumber, const string &atname, const string &resname, const char &ch, const long &resnumber, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &atrec) | BioChain | |
| BioChain(const char &chid, vector< BioResidue >) | BioChain | |
| BioProteinChain() | BioProteinChain | |
| BioProteinChain(const string &) | BioProteinChain | |
| BioProteinChain(const string &, const char &) | BioProteinChain | |
| BioProteinChain(const char &chid, const vector< BioResidue > &) | BioProteinChain | |
| BioProteinChain(const long &atnumber, const string &atname, const string &resname, const char &ch, const long &resnumber, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &atrec) | BioProteinChain | |
| chainId_ | BioChain | [protected] |
| eraseHydrogen() | BioProteinChain | |
| findChainId(const char &) | BioChain | |
| getAverageBfactor() | BioChain | |
| getCentroid() | BioChain | |
| getCentroid(const string &) | BioChain | |
| getChainId() const | BioChain | |
| getChainSegment(const long &first, const long &last) | BioProteinChain | |
| getChainSegment(const long &first, const long &last, const string &atname) | BioProteinChain | |
| getDistance(const int &, const string &, const float &, const float &, const float &) | BioChain | |
| getDistance(const int &, const int &, const float &, const float &, const float &) | BioChain | |
| getDistance(const int &, const string &, const BioAtom &) | BioChain | |
| getDistance(const int &, const int &, const BioAtom &) | BioChain | |
| getLastResidue() | BioChain | |
| getLastResidueName() const | BioChain | |
| getLastResidueNumber() const | BioChain | |
| getNormalizedBfactors() | BioChain | |
| getNumberOfAtoms() const | BioChain | |
| getNumberOfResidues() const | BioChain | |
| getResidue(const int &) | BioChain | |
| getResidueIndex(const long &) const | BioChain | |
| getResidues() | BioChain | |
| getRotatedProteinChain(const float **arr) | BioProteinChain | |
| getSequence() | BioProteinChain | |
| getSequenceLength() | BioProteinChain | |
| getSequenceSegment(const long &, const long &) | BioProteinChain | |
| operator+(BioProteinChain &) | BioProteinChain | |
| operator+(BioResidue &, BioResidue &) | BioProteinChain | [friend] |
| operator+(BioResidue &) | BioProteinChain | |
| operator<(const BioProteinChain &, const BioProteinChain &) | BioProteinChain | [friend] |
| operator<<(ostream &os, BioProteinChain &ip) | BioProteinChain | [friend] |
| BioChain::operator<<(ostream &os, BioChain &ip) | BioChain | [friend] |
| operator==(const BioProteinChain &, const BioProteinChain &) | BioProteinChain | [friend] |
| operator>(const BioProteinChain &, const BioProteinChain &) | BioProteinChain | [friend] |
| pushResidue(const BioResidue &) | BioChain | |
| pushResidue(const unsigned long &atnumber, const string &atname, const string &resname, const long &resnum, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &) | BioChain | |
| residue | BioChain | [protected] |
| setChainId(const char &ch) | BioChain | |
| setNormalizedBfactors() | BioChain | |
| setProteinDisplayArea(double startx=80, double starty=250, double size=450) | BioProteinChain | |
| setRamaPlotColorSpec(float=96.0, float=128.99, float=170.9, float=249, float=219, float=31.98, float=0, float=0, float=0) | BioProteinChain | |
| showBackBone(BioPostScript &ps, double width=1, double r=255, double g=0, double b=0) | BioProteinChain | |
| showCAlphaTrace(BioPostScript &bioPostScriptObject, double width=1, double r=0, double g=0, double b=0) | BioProteinChain | |
| showChain(ostream &=cout) | BioChain | |
| showChainSegment(const long &, const long &, ostream &=cout) | BioChain | |
| showChainSegment(const long &, const long &, const string &atname, ostream &=cout) | BioChain | |
| showChiAngles(ostream &=cout) | BioProteinChain | |
| showInFasta(ostream &os=cout) | BioProteinChain | |
| showPhiPsiOmega(ostream &=cout) | BioProteinChain | |
| showProteinChain(BioPostScript &obj, double width=1, double r=0, double g=0, double b=0) | BioProteinChain | |
| showRamaChandranPlot(BioPostScript &bioPostScriptObject, int type=FILLED_TRIANGLE, int pointWidth=3.2, int startX=80, int startY=250, int width=450, int height=450) | BioProteinChain | |
| showSphereAnAtom(const unsigned int &, const string &, ostream &=cout, const float &=2.3, const float &=3.2) | BioChain | |
| showSphereAnAtom(const unsigned int &, const unsigned int &, ostream &=cout, const float &=2.3, const float &=3.2) | BioChain | |
| ~BioChain() | BioChain | [virtual] |
| ~BioProteinChain() | BioProteinChain | [inline] |
1.7.6.1 
