, including all inherited members.
| BioPdb(const string &) | BioPdb | |
| BioPdbCompnd() | BioPdbCompnd | |
| BioPdbCompnd(const string &ti_) | BioPdbCompnd | |
| BioPdbCryst1(const string &head_) | BioPdbCryst1 | |
| BioPdbDbref() | BioPdbDbref | |
| BioPdbDbref(const string &fi_) | BioPdbDbref | |
| BioPdbHeader(const string &head_) | BioPdbHeader | |
| BioPdbKeywds(const string &ti_) | BioPdbKeywds | |
| BioPdbModres() | BioPdbModres | |
| BioPdbModres(const string &) | BioPdbModres | |
| BioPdbOrigxn(const string &ti_) | BioPdbOrigxn | |
| BioPdbRemark2() | BioPdbRemark2 | |
| BioPdbRemark2(const string &fi_) | BioPdbRemark2 | |
| BioPdbRemark465() | BioPdbRemark465 | |
| BioPdbRemark465(const string &fi_) | BioPdbRemark465 | |
| BioPdbScalen(const string &ti_) | BioPdbScalen | |
| BioPdbSeqres(const string &ti_) | BioPdbSeqres | |
| BioPdbSource() | BioPdbSource | |
| BioPdbSource(const string &ti_) | BioPdbSource | |
| BioPdbTitle(const string &ti_) | BioPdbTitle | |
| BioProtein() | BioProtein | |
| BioProtein(const string &) | BioProtein | |
| BioProtein(const vector< BioProteinChain > &, const BioWater &) | BioProtein | |
| BioProtein(const vector< BioProteinChain > &) | BioProtein | |
| BioSecondaryStructure(const string &) | BioSecondaryStructure | |
| findCompnd(string) | BioPdbCompnd | |
| findHeader(const string &) | BioPdbHeader | |
| findSeqresChainId(char) | BioPdbSeqres | |
| findSource(string) | BioPdbSource | |
| findTitle(const string &) | BioPdbTitle | |
| getA() | BioPdbCryst1 | |
| getAlpha() | BioPdbCryst1 | |
| getB() | BioPdbCryst1 | |
| getBeta() | BioPdbCryst1 | |
| getC() | BioPdbCryst1 | |
| getClassification() | BioPdbHeader | |
| getCompnd(int) | BioPdbCompnd | |
| getDatabaseAccession(char, string) | BioPdbDbref | |
| getDatabaseEndingResidueNumber(char, string) | BioPdbDbref | |
| getDatabaseIdentifier(char, string) | BioPdbDbref | |
| getDatabaseInitialResidueNumber(char, string) | BioPdbDbref | |
| getDbref(int) | BioPdbDbref | |
| getDepositedDate() | BioPdbHeader | |
| getDepositedDay() | BioPdbHeader | |
| getDepositedMonth() | BioPdbHeader | |
| getDepositedYear() | BioPdbHeader | |
| getDuplicateChainIndices(char c) | BioProtein | |
| getEndingResidueNumber(char, string) | BioPdbDbref | |
| getGamma() | BioPdbCryst1 | |
| getHelix(char ch_id, int helix_index) | BioSecondaryStructure | |
| getHelix(int ch_id_index, int helix_index) | BioSecondaryStructure | |
| getHelixDirectionCosines() | BioSecondaryStructure | |
| getHelixIdIndex(const string &) | BioSecondaryStructure | |
| getHelixLength() | BioPdb | |
| getHelixSequence(int index) | BioSecondaryStructure | |
| getInitialResidueNumber(char, string) | BioPdbDbref | |
| getKeywdsSize() | BioPdbKeywds | |
| getLastChain() | BioProtein | |
| getLastChainId() const | BioProtein | |
| getMissingResidue(int i) | BioPdbRemark465 | |
| getMissingResiduePosition(int i) | BioPdbRemark465 | |
| getMissingResiduePositions() | BioPdbRemark465 | |
| getMissingResiduePositions(char ch) | BioPdbRemark465 | |
| getMissingResidues() | BioPdbRemark465 | |
| getMissingResidues(char ch) | BioPdbRemark465 | |
| getModifiedResidueComment(int) | BioPdbModres | |
| getModifiedResidueName(int) | BioPdbModres | |
| getModifiedResidueNames() | BioPdbModres | |
| getModifiedResidueNames(char) | BioPdbModres | |
| getModifiedResiduePosition(int) | BioPdbModres | |
| getModifiedResiduePositions() | BioPdbModres | |
| getModifiedResiduePositions(char) | BioPdbModres | |
| getNumberOfCompnds() | BioPdbCompnd | |
| getNumberOfDatabaseReferences(char) | BioPdbDbref | |
| getNumberOfDatabaseReferences() | BioPdbDbref | |
| getNumberOfHelices() | BioSecondaryStructure | |
| getNumberOfHelices(char chai_id) | BioSecondaryStructure | |
| getNumberOfHelices(int index) | BioSecondaryStructure | |
| getNumberOfMissingResidues() | BioPdbRemark465 | |
| getNumberOfMissingResidues(int i) | BioPdbRemark465 | |
| getNumberOfMissingResidues(char ch) | BioPdbRemark465 | |
| getNumberOfModifiedResidues() | BioPdbModres | |
| getNumberOfModifiedResidues(char) | BioPdbModres | |
| getNumberOfProteinChains() const | BioProtein | |
| getNumberOfSecondaryStructureChainIds() | BioSecondaryStructure | |
| getNumberOfSheets() | BioSecondaryStructure | |
| getNumberOfSources() | BioPdbSource | |
| getNumberOfTurns() | BioSecondaryStructure | |
| getNumberOfTurns(char chai_id) | BioSecondaryStructure | |
| getNumberOfTurns(int index) | BioSecondaryStructure | |
| getNumberOfUniqueProteinChainIds() | BioProtein | |
| getNumberOfWaters() const | BioProtein | |
| getOrigxnMatrix(double[3][3], double[3]) | BioPdbOrigxn | |
| getOrigxnSize() | BioPdbOrigxn | |
| getPdbId() | BioPdbHeader | |
| getProteinChain(const int &) | BioProtein | |
| getProteinChain(const char &) | BioProtein | |
| getProteinChain(const int &, const string &) | BioProtein | |
| getProteinChainIdIndex(const char &) | BioProtein | |
| getProteinChainIds() | BioProtein | |
| getProteinChains() | BioProtein | |
| getReferenceDatabases() | BioPdbDbref | |
| getResolution() | BioPdbRemark2 | |
| getScalenMatrix(double[3][3], double[3]) | BioPdbScalen | |
| getScalenSize() | BioPdbScalen | |
| getSecondaryStructureChainId(int index) | BioSecondaryStructure | |
| getSecondaryStructureSequence(int index) | BioSecondaryStructure | |
| getSecondaryStructureSequence(char chainID) | BioSecondaryStructure | |
| getSeqresChainId(int chainIdIndex) | BioPdbSeqres | |
| getSeqresNumberOfChainIds() | BioPdbSeqres | |
| getSeqresSequence(char) | BioPdbSeqres | |
| getSeqresSequenceLength(char) | BioPdbSeqres | |
| getSeqresSequenceSegment(char, int, int) | BioPdbSeqres | |
| getSheet(int) | BioSecondaryStructure | |
| getSheetDirectionCosines(int) | BioSecondaryStructure | |
| getSheetIdIndex(const string &) | BioSecondaryStructure | |
| getSheetSequence(int shIndex, int strIndex) | BioSecondaryStructure | |
| getSource(int) | BioPdbSource | |
| getSpaceGroup() | BioPdbCryst1 | |
| getStandardResidueName(int) | BioPdbModres | |
| getStandardResidueNames() | BioPdbModres | |
| getStandardResidueNames(char) | BioPdbModres | |
| getTurn(char ch_id, int) | BioSecondaryStructure | |
| getTurn(int ch_id_index, int turn_index) | BioSecondaryStructure | |
| getTurnIdIndex(const string &) | BioSecondaryStructure | |
| getTurnSequence(int index) | BioSecondaryStructure | |
| getUniqueProteinChainIds() | BioProtein | |
| getWater() | BioProtein | |
| getWaterMolecule(const int &) | BioProtein | |
| getZ() | BioPdbCryst1 | |
| mergeProteinChainsWithDuplicateIds() | BioProtein | |
| pushProteinChain(const BioProteinChain &) | BioProtein | |
| pushProteinChain(const unsigned long &atnumber, const string &atname, const string &resname, const char &ch, const long &resnum, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &) | BioProtein | |
| setPdbCompnd(vector< string >) | BioPdbCompnd | [protected] |
| setPdbSource(vector< string >) | BioPdbSource | |
| showAllHelixSequences(ostream &=cout) | BioSecondaryStructure | |
| showAllSheetSequences(ostream &=cout) | BioSecondaryStructure | |
| showAllTurnSequences(ostream &=cout) | BioSecondaryStructure | |
| showCryst1(ostream &=cout) | BioPdbCryst1 | |
| showDbref(ostream &=cout) | BioPdbDbref | |
| showHeader(ostream &=cout) | BioPdbHeader | |
| showHelixDirectionCosines(int) | BioSecondaryStructure | |
| showHelixDirectionCosines(BioProteinChain &, int) | BioSecondaryStructure | |
| showHelixIds(ostream &=cout) | BioSecondaryStructure | |
| showKeywds(ostream &=cout) | BioPdbKeywds | |
| showOrigxn(ostream &=cout) | BioPdbOrigxn | |
| showProtein(ostream &=cout) | BioProtein | |
| showProteinChain(const char &, ostream &=cout) | BioProtein | |
| showProteinChain(const int &, ostream &=cout) | BioProtein | |
| showProteinChainIds(ostream &=cout) | BioProtein | |
| showRemark2(ostream &=cout) | BioPdbRemark2 | |
| showRemark465(ostream &=cout) | BioPdbRemark465 | |
| showScalen(ostream &=cout) | BioPdbScalen | |
| showSecondaryStructure(int index, BioPostScript &ps, float startx=50, float starty=800, float width=475) | BioSecondaryStructure | |
| showSecondaryStructure(char index, BioPostScript &ps, float startx=50, float starty=800, float width=475) | BioSecondaryStructure | |
| showSeqres(ostream &=cout) | BioPdbSeqres | |
| showSeqres(char, ostream &=cout) | BioPdbSeqres | |
| showSeqresChainIds(ostream &=cout) | BioPdbSeqres | |
| showSheetIds(ostream &=cout) | BioSecondaryStructure | |
| showTitle(ostream &=cout) | BioPdbTitle | |
| showTurnIds(ostream &=cout) | BioSecondaryStructure | |
| showUniqueProteinChainIds(ostream &=cout) | BioProtein | |
| showWater(ostream &os=cout) | BioProtein | |
| ~BioProtein() | BioProtein | |
1.7.6.1 
