BioFTLSingleBase.h

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/****************************************************************************
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The BioBhasha : A Programming Language for Biologist
Version 1.0 (19th December 2001)
Dr. Prasad, B.V.L.S.
Contact: prasadbvls@helixgenomics.com
Version 1.1 (23th January 2003)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
*****************************************************************************/
#ifndef BIOFTLSINGLEBASE_H
#define BIOFTLSINGLEBASE_H


using namespace std;
#include <string>
#include <iostream>
#include <vector>
#include "BioDnaSequence.h"


class BioFTLSingleBase
{
        int basePosition_;

        int lowerBoundBasePosition_;
        int upperBoundBasePosition_;

  bool complement_;

        protected:
        void setBioFTLSingleBase(const string& bou_);

        
public: 
        BioFTLSingleBase(){}
        BioFTLSingleBase(const string& bou_);
        void setBasePosition(int value);

        int getBasePosition();
        int getLowerBoundBasePosition();
        int getUpperBoundBasePosition();

  string getBase(BioDnaSequence& );

        bool findSingleDot(const string& );
  void showSingleBase(ostream & = cout,string x = " ");
};


#endif