, including all inherited members.
| BioDnaSequence(const string &) | BioDnaSequence | |
| BioDnaSequence() | BioDnaSequence | |
| BioDnaSequence(const string &seqnam, const string &seq) | BioDnaSequence | |
| BioGenBankSequence() | BioGenBankSequence | |
| BioGenBankSequence(const string &de_) | BioGenBankSequence | |
| BioSequence() | BioSequence | |
| BioSequence(const string &filename) | BioSequence | |
| BioSequence(const string &seqnam, const string &seq) | BioSequence | |
| checkDnaSequence() | BioDnaSequence | |
| checkSequence() | BioSequence | |
| find(const string &words) | BioSequence | |
| findPattern(const string &pat) | BioSequence | |
| getBase(const long &) | BioDnaSequence | |
| getComplementarySequence() | BioDnaSequence | |
| getComplementarySequence(const long &, const long &) | BioDnaSequence | |
| getDeletedSequence(const long &, const long &) | BioSequence | |
| getInsertedSequence(const long &, const string &) | BioSequence | |
| getMolecularWeight() | BioDnaSequence | |
| getmRnaSequence() | BioDnaSequence | |
| getmRnaSequence(const long &, const long &) | BioDnaSequence | |
| getMutatedSequence(const long &, const char &) | BioSequence | |
| getMutatedSequence(const long &, const string &) | BioSequence | |
| getMutatedSequence(const char &, const char &) | BioSequence | |
| getMutatedSequence(const string &, const string &) | BioSequence | |
| getMutatedSequence(const long &, const long &, const string &) | BioSequence | |
| getMutatedSequence(string &s1) | BioSequence | |
| getNumberOfOccurrences(const char &ch) | BioSequence | |
| getNumberOfOccurrences(const string &pattern) | BioSequence | |
| getNumberOfSSRs(const string &pat, const int &repeats) | BioSequence | |
| getPercentAT() | BioDnaSequence | |
| getPercentGC() | BioDnaSequence | |
| getPositionsOfPattern(const string &pat) | BioSequence | |
| getPositionsOfSSRs(const string &pat, const int &repeats) | BioSequence | |
| getSequence() const | BioSequence | |
| getSequenceLength() const | BioSequence | |
| getSequenceName() const | BioSequence | |
| getSequenceSegment(const long &a, const long &b) | BioSequence | |
| getShuffledSequence() | BioSequence | |
| getTm() | BioDnaSequence | |
| getTranslatedSequence(const int &frameNumber) | BioDnaSequence | |
| getTranslatedSequence(const long &, const long &, const int &frameNumber) | BioDnaSequence | |
| readFasta(ifstream &) | BioSequence | |
| seqname_ | BioSequence | [protected] |
| sequence_ | BioSequence | [protected] |
| setSequence(string, vector< string >) | BioGenBankSequence | [protected] |
| BioDnaSequence::setSequence(const string &seqnam, const string &seq) | BioDnaSequence | |
| BioDnaSequence::setSequence(const string &seq) | BioDnaSequence | |
| setSequenceName(const string &seqnam) | BioDnaSequence | |
| showInFasta(ostream &=cout) | BioSequence | |
| showPositionsOfPattern(const string &pat, ostream &os=cout) | BioSequence | |
| showPositionsOfPattern(const string &pat, BioPostScript &ps, const int &xpos=100, const int &ypos=650, const int &w=450, const int &h=20) | BioSequence | |
| showSequence(ostream &=cout) | BioGenBankSequence | |
| showShuffledSequence(ostream &os=cout) | BioSequence | |
| showSSRs(const string &pat, const int &repeats, ostream &os=cout) | BioSequence | |
| showSSRs(const string &pat, const int &repeats, BioPostScript &ps, const int &xpos=100, const int &ypos=650, const int &w=450, const int &h=20) | BioSequence | |
| showTranslatedSequences(ostream &os=cout) | BioDnaSequence | |
| showTranslatedSequences(const long &, const long &, ostream &os=cout) | BioDnaSequence | |
| showTranslatedSequences(BioHtml &) | BioDnaSequence | |
| showTranslatedSequences(BioPostScript &, int startX=75, int startY=200, int len=400) | BioDnaSequence | |
| ~BioDnaSequence() | BioDnaSequence | |
1.7.6.1 
