BioPdbSheet.h

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/****************************************************************************
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The BioBhasha : The Biologist's Programming Language 
Version 1.0 (19th December 2001)
Prasad, B.V.L.S.
Contact: burrashiva@yahoo.com
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
*****************************************************************************/
#ifndef BIOPDBSHEET_H
#define BIOPDBSHEET_H

#include "BioPdbStrand.h"
#include "BioMatrix.h"
#include <vector>
#include <string>
#include <fstream>

/*****************************************************************************
 *
 * COMMENTARY on Each Class/Concept: Hows and Whys :
 *
 * BioPdbSheet:
 *              
 ******************************************************************************/
class BioPdbSheet
{

        vector<BioPdbStrand>strand;
        string sheetId_;
        int numberOfStrands_;
        string FILE;

           friend bool operator >(const BioPdbSheet& , const BioPdbSheet&);
              friend bool operator <(const BioPdbSheet& , const BioPdbSheet&);
                 friend bool operator ==(const BioPdbSheet& , const BioPdbSheet&);


public:
        BioPdbSheet(){}
        BioPdbSheet(const string&);
        BioPdbSheet(int ssn,string sid,int nos,string irna, char ic, int irnu,
                        string erna, char ec, int ernu, int ss, string f);

        void pushStrand(int ssn,string irna,char ic,int irnu, string erna,char ec, int ernu,int ss, string f);

        int getNumberOfStrands();
        void setNumberOfStrands(int x); //Added on 25 Sep 2012
        int getSizeOfStrandVector();//Temporary addition
        string getSheetId();

        void showSheetSequences(ostream& = cout);
        void showSheetSequences(BioProteinChain& ,ostream& = cout);

        string getSheetSequence(int );
        string getSheetSequence(BioProteinChain& , int );

        BioPdbStrand getStrand( int strIndex);


        void showSheetCoordinates(ostream& = cout);
        void showSheetCoordinates(BioProteinChain&, ostream& = cout);

        BioProteinChain getSheetCoordinates(int);
        BioProteinChain getSheetCoordinates(BioProteinChain&, int );

        BioProteinChain getSheetCoordinates();
        BioProteinChain getSheetCoordinates(BioProteinChain& );

        BioMatrix getSheetDirectionCosines();
};

#endif