BioFTLBaseRange.h

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/****************************************************************************
 * ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 * The BioBhasha : A Programming Language for Biologist
 * Version 1.0 (19th December 2001)
 * Dr. Prasad, B.V.L.S.
 * Contact: prasadbvls@helixgenomics.com
 * Version 1.1 (23th January 2003)
 * ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 * *****************************************************************************/
#ifndef BIOFTLBASERANGE_H
#define BIOFTLBASERANGE_H

#include "BioFTLSingleBaseRange.h"
#include "BioDnaSequence.h"

//Written by IRIS::SwapnaK
class BioFTLBaseRange : public BioFTLSingleBaseRange  
{

  string rangeString_;
  string joinFunction(BioDnaSequence&, string &);
  string complementFunction(BioDnaSequence&, string &);
  string getRange(BioDnaSequence& , int start,int end);
  
public:
        BioFTLBaseRange();
        
        BioFTLBaseRange(const string& );
        virtual ~BioFTLBaseRange();

  void setBioFTLBaseRange(const string& );
  string getSequence(BioDnaSequence&);
//  string getSequence(BioMultipleGenBank& );
  
  bool findPartial();
  bool findStartingPartial();
  bool findEndingPartial();
  string getBaseRange();
  void showBaseRange(ostream& os = cout,string x= " ");
  void showSequence(BioDnaSequence& , ostream& os = cout);
  
};

#endif