BioProteinMultipleSequenceAlignment Member List

This is the complete list of members for BioProteinMultipleSequenceAlignment, including all inherited members.

BioMultipleSequenceAlignment()	BioMultipleSequenceAlignment
BioMultipleSequenceAlignment(BioMultipleFasta &)	BioMultipleSequenceAlignment
BioMultipleSequenceAlignment(BioMultipleGenBank &)	BioMultipleSequenceAlignment
BioMultipleSequenceAlignment(BioMultipleEmbl &)	BioMultipleSequenceAlignment
BioMultipleSequenceAlignment(BioMultipleSwissProt &)	BioMultipleSequenceAlignment
BioProteinMultipleSequenceAlignment()	BioProteinMultipleSequenceAlignment
BioProteinMultipleSequenceAlignment(BioMultipleFasta)	BioProteinMultipleSequenceAlignment
BioProteinMultipleSequenceAlignment(BioMultipleSwissProt)	BioProteinMultipleSequenceAlignment
getAlignedSequence(int i)	BioMultipleSequenceAlignment
getAlignedSequenceInFasta(int i)	BioMultipleSequenceAlignment
getAlignedSequenceName(int i)	BioMultipleSequenceAlignment
getAlignedSequences()	BioMultipleSequenceAlignment
getAlignedSequencesInMultipleFasta()	BioMultipleSequenceAlignment
getColumn(int i)	BioMultipleSequenceAlignment
getColumnScore(int index)	BioProteinMultipleSequenceAlignment
BioMultipleSequenceAlignment::getColumnScore(int col_index, string s)	BioMultipleSequenceAlignment
getColumnScores()	BioProteinMultipleSequenceAlignment
BioMultipleSequenceAlignment::getColumnScores(string type)	BioMultipleSequenceAlignment
getProfileMatrix()	BioProteinMultipleSequenceAlignment
BioMultipleSequenceAlignment::getProfileMatrix(string s)	BioMultipleSequenceAlignment
showAlignment(ostream &=cout)	BioMultipleSequenceAlignment