BioPdbStrand.h

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#ifndef BIOPDBSTRAND_H
#define BIOPDBSTRAND_H

#include <string>
#include <vector>
#include <fstream>
#include "BioProteinChain.h"

class BioPdbStrand
{
        // Caution: Insertion Code is not included ....hence this is not 
        // exactly following the PDB helix format...
        // I will add them in future releases. Bear with me Untill then.

        int  strandSerialNumber_;
        string initialResidueName_;
        int initialResidueNumber_;
        char initialChainId_;

        string endingResidueName_;
        int endingResidueNumber_;
        char endingChainId_;
        string FILE;
        int strandSense_;
           friend bool operator >(const BioPdbStrand& , const BioPdbStrand&);
              friend bool operator <(const BioPdbStrand& , const BioPdbStrand&);
                 friend bool operator ==(const BioPdbStrand& , const BioPdbStrand&);

public:
        BioPdbStrand(){}
        BioPdbStrand(const string& ti_);
        BioPdbStrand(int ssn,string irna, char ic, int irnu,
                        string erna, char ec, int ernu, int ss, string f);

        int getStrandSerialNumber() ;

        string getInitialResidueName() ;
        int getInitialResidueNumber() ;

        char getInitialChainId() ;
        char getEndingChainId() ;

        string getEndingResidueName() ;
        int getEndingResidueNumber() ;

        int getStrandSense() ;

        int getNumberOfResidues();

        BioProteinChain getStrandCoordinates();
        BioProteinChain getStrandCoordinates(BioProteinChain&  );

        string getStrandSequence();
        string getStrandSequence(BioProteinChain&  );

        void showStrandCoordinates( ostream& out = cout);
        void showStrandCoordinates( BioProteinChain& ,ostream& out = cout);
};

#endif