BioProteinMultipleSequenceAlignment.h

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#ifndef BIOPROTEINMULTIPLESEQUENCEALIGNMENT_H
#define BIOPROTEINMULTIPLESEQUENCEALIGNMENT_H

#include "BioMultipleSequenceAlignment.h"

class BioProteinMultipleSequenceAlignment: public BioMultipleSequenceAlignment
{
public:
        BioProteinMultipleSequenceAlignment();
        BioProteinMultipleSequenceAlignment(BioMultipleFasta);
        BioProteinMultipleSequenceAlignment(BioMultipleSwissProt );  
        BioMatrix getProfileMatrix();
        int getColumnScore(int index);
        vector<int> getColumnScores();
};

#endif