BioPdbTurn.h

Go to the documentation of this file.

#ifndef BIOPDBTURN_H
#define BIOPDBTURN_H

using namespace std;

#include <string>
#include <vector>
#include <fstream>
#include "BioProteinChain.h"

class BioPdbTurn
{
        // Caution: Insertion Code is not included ....hence this is not 
        // exactly following the PDB turn format...
        // I will add them in future releases. Bear with me Untill then.

        int turnSerialNumber_;
        string turnId_;
        char initialChainId_;
        char endingChainId_;
        string FILE;
  string initialResidueName_;
        int initialResidueNumber_;


        string endingResidueName_;
        int endingResidueNumber_;

        string comment_;
        
           friend bool operator >(const BioPdbTurn& , const BioPdbTurn&);
              friend bool operator <(const BioPdbTurn& , const BioPdbTurn&);
                 friend bool operator ==(const BioPdbTurn& , const BioPdbTurn&);

public:
        BioPdbTurn(){}
        BioPdbTurn(const string& ti_);
        BioPdbTurn(int hs,string hid,string irna, char ic, int irnu,
                     string erna, char ec, int ernu, string com, string f);

        int getTurnSerialNumber() ;
        string getTurnId() ;
        string getInitialResidueName() ;
        int getInitialResidueNumber();

        char getInitialChainId() ;
        char getEndingChainId() ;

        string getEndingResidueName() ;
        int getEndingResidueNumber() ;

        int getTurnLength() ;

        string getComment() ;

        BioProteinChain getTurnCoordinates(const string& );
        BioProteinChain getTurnCoordinates(BioProteinChain&  );

        void showTurnCoordinates(const string& ,ostream&  = cout);
        void showTurnCoordinates(BioProteinChain& ,ostream&  = cout);

        string getTurnSequence(const string& );
        string getTurnSequence(BioProteinChain&  );
};

#endif