BioMultipleGenBank.h

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/****************************************************************************
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The BioBhasha : The Biologist's Programming Language 
Version 1.0 (19th December 2001)
Prasad, B.V.L.S.
Contact: burrashiva@yahoo.com
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
*****************************************************************************/
#ifndef BIOMULTIPLEGENBANK_H
#define BIOMULTIPLEGENBANK_H

#include <string>
#include <vector>
#include "BioGenBank.h"

using namespace std;


class BioMultipleGenBank 
{

        vector <BioGenBank> multipleGenBank_;

public:
  BioMultipleGenBank();
  ~BioMultipleGenBank();
  BioMultipleGenBank(const string& );

  long getNumberOfEntries();
  long getNumberOfOccurrencesOfGene(const string& );
  long getNumberOfGenomes();
  
  BioMultipleGenBank getEntriesByOrganism(const string& );
  BioMultipleGenBank getEntriesByGene(const string& );
  BioMultipleGenBank getEntriesByGenomes();

  vector<string>  getUniqueGenes();
  vector<string>  getUniqueOrganisms();

  BioGenBank getEntry(const string& );
  BioGenBank getEntry(unsigned long);

  bool findDefinition( unsigned long i, const string& );
  bool findLocus( unsigned long i, const string& );
  bool findAccession(unsigned long i,  const string& );
  bool findSource(unsigned long i,  const string& );
  bool findOrganism( unsigned long i, const string& );
  bool findTaxanomy( unsigned long i, const string& );
  bool findKeyword( unsigned long i, const string& );

  void showInMultipleFasta(const string& );
  void showInMultipleFasta(ostream& = cout);
  void showInFasta(int, ostream& = cout);


  friend BioMultipleGenBank operator+= (BioMultipleGenBank& , BioGenBank );
   
  friend BioMultipleGenBank operator+( BioMultipleGenBank , BioGenBank& );
  friend BioMultipleGenBank operator+( BioGenBank&, BioGenBank&);

  void pushEntry(BioGenBank);

};

#endif