BioBlast.h

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/****************************************************************************
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The BioBhasha : The Biologist's Programming Language 
Version 1.0 (19th December 2001)
Prasad, B.V.L.S.
Contact: burrashiva@yahoo.com
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
*****************************************************************************/
#ifndef BIOBLAST_H
#define BIOBLAST_H

#include "BioSingleBlast.h"

class BioBlast
{
        friend bool operator<( const BioBlast& x, const BioBlast& y);
        friend bool operator>( const BioBlast& x, const BioBlast& y);
        friend bool operator==( const BioBlast& x, const BioBlast& y);

        string dbName_;
        string queryName_;
        vector <BioSingleBlast> singleBlast_;

public:
        BioBlast(const string& );
        string getQueryName();
        string getDatabaseName();
        
        int getNumberOfAlignments();
        vector<BioSingleBlast> getAlignment(double evalue);

        BioSingleBlast getAlignment(int index);

        bool findAlignment(string search);


};

#endif