db/d2a/_bio_multiple_sequences_8h_source.html

00001 /****************************************************************************
00002 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
00003 The BioBhasha : The Biologist's Programming Language
00004 Version 1.0 (19th December 2001)
00005 Prasad, B.V.L.S.
00006 Contact: burrashiva@yahoo.com
00007 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
00008 *****************************************************************************/
00009 #ifndef BIOMULTIPLESEQUENCES_H
00010 #define BIOMULTIPLESEQUENCES_H
00011
00012 #include <string>
00013 #include <vector>
00014 #include "BioSequence.h"
00015
00016 class BioMultipleSequences
00017 {
00018 protected:
00019
00020         vector<BioSequence>multiple_;
00021   BioMultipleSequences();
00022 public:
00023
00024         int getNumberOfEntries();
00025   BioSequence getEntry(unsigned long);
00026   bool find( unsigned long i, const string& );
00027   long getSequenceIndex( const string& );
00028 };
00029
00030 #endif