BioSwissProtCc.h

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/***************************************************************************
                          BioSwissProtCc.h  -  description
                             -------------------
    begin                : Fri May 14 2004
    copyright            : (C) 2004 by Helix Team
    email                : parisodhana@helixgenomics.com
 ***************************************************************************/

/***************************************************************************
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU General Public License as published by  *
 *   the Free Software Foundation; either version 2 of the License, or     *
 *   (at your option) any later version.                                   *
 *                                                                         *
 ***************************************************************************/
#ifndef BIOSISSPROTCC_H
#define BIOSISSPROTCC_H

using namespace std;

#include <iostream>
#include <string>
#include <iomanip>
#include <sstream>
#include <fstream>
#include <vector>

#include "BioSwissProtCcAllergen.h"
#include "BioSwissProtCcAlternativeProducts.h"
#include "BioSwissProtCcBioTechnology.h"
#include "BioSwissProtCcCatalyticActivity.h"
#include "BioSwissProtCcCaution.h"
#include "BioSwissProtCcCoFactor.h"
#include "BioSwissProtCcDatabase.h"
#include "BioSwissProtCcDevelopmentalStage.h"
#include "BioSwissProtCcDisease.h"
#include "BioSwissProtCcDomain.h"
#include "BioSwissProtCcFunction.h"
#include "BioSwissProtCcEnzymeRegulation.h"
#include "BioSwissProtCcInduction.h"
#include "BioSwissProtCcMassSpectrometry.h"
#include "BioSwissProtCcMiscellaneous.h"
#include "BioSwissProtCcPathWay.h"
#include "BioSwissProtCcPharmaceutical.h"
#include "BioSwissProtCcPolymorphism.h"
#include "BioSwissProtCcPtm.h"
#include "BioSwissProtCcRnaEditing.h"
#include "BioSwissProtCcSubCellularLocation.h"
#include "BioSwissProtCcSubUnit.h"
#include "BioSwissProtCcSimilarity.h"
#include "BioSwissProtCcTissueSpecificity.h"

class BioSwissProtCc
{
      vector<BioSwissProtCcAllergen> allergen_;
      vector<BioSwissProtCcAlternativeProducts> alternativeproducts_;
      vector<BioSwissProtCcBioTechnology> biotechnology_;
      vector<BioSwissProtCcCatalyticActivity> catalyticactivity_;
      vector<BioSwissProtCcCaution> caution_;
      vector<BioSwissProtCcCoFactor> cofactor_;
      vector<BioSwissProtCcDatabase> database_;
      vector<BioSwissProtCcDevelopmentalStage> developmentalstage_;
      vector<BioSwissProtCcDisease> disease_;
      vector<BioSwissProtCcDomain>  domain_;
      vector<BioSwissProtCcFunction> function_;
      vector<BioSwissProtCcEnzymeRegulation> enzymeregulation_;
      vector<BioSwissProtCcInduction> induction_;
      vector<BioSwissProtCcMassSpectrometry> massspectrometry_;
      vector<BioSwissProtCcMiscellaneous> miscellaneous_;
      vector<BioSwissProtCcPathWay> pathway_;
      vector<BioSwissProtCcPharmaceutical> pharmaceutical_;
      vector<BioSwissProtCcPolymorphism> polymorphism_;
      vector<BioSwissProtCcPtm> ptm_;
      vector<BioSwissProtCcRnaEditing> rnaediting_;
      vector<BioSwissProtCcSubCellularLocation> subcellularlocation_;
      vector<BioSwissProtCcSubUnit> subunit_;
      vector<BioSwissProtCcSimilarity> similarity_;
      vector<BioSwissProtCcTissueSpecificity> tissuespecificity_;

      void alignCc(string,ostream & = cout);

        friend bool operator >(const BioSwissProtCc& , const BioSwissProtCc&);
        friend bool operator <(const BioSwissProtCc& , const BioSwissProtCc&);
        friend bool operator ==(const BioSwissProtCc& , const BioSwissProtCc&);

  public :
        BioSwissProtCc();
        BioSwissProtCc(const string &);
        void setCc(vector <string>);

        int getNumberOfCcAllergens();
        BioSwissProtCcAllergen getCcAllergen(unsigned int);

        int getNumberOfCcAlternativeProducts();
        BioSwissProtCcAlternativeProducts getCcAlternativeProducts(unsigned int);

        int getNumberOfCcBioTechnologies();
        BioSwissProtCcBioTechnology getCcBioTechnology(unsigned int);

        int getNumberOfCcCatalyticActivities();
        BioSwissProtCcCatalyticActivity getCcCatalyticActivity(unsigned int);

        int getNumberOfCcCautions();
        BioSwissProtCcCaution getCcCaution(unsigned int);

        int getNumberOfCcCoFactors();
        BioSwissProtCcCoFactor getCcCoFactor(unsigned int);

        int getNumberOfCcDatabases();
        BioSwissProtCcDatabase getCcDatabase(unsigned int);

        int getNumberOfCcDevelopmentalStages();
        BioSwissProtCcDevelopmentalStage getCcDevelopmentalStage(unsigned int);

        int getNumberOfCcDiseases();
        BioSwissProtCcDisease getCcDisease(unsigned int);

        int getNumberOfCcDomains();
        BioSwissProtCcDomain getCcDomain(unsigned int);

        int getNumberOfCcEnzymeRegulations();
        BioSwissProtCcEnzymeRegulation getCcEnzymeRegulation(unsigned int);

        int getNumberOfCcFunctions();
        BioSwissProtCcFunction getCcFunction(unsigned int);

        int getNumberOfCcInductions();
        BioSwissProtCcInduction getCcInduction(unsigned int);

        int getNumberOfCcMassSpectrometries();
        BioSwissProtCcMassSpectrometry getCcMassSpectrometry(unsigned int);

        int getNumberOfCcMiscellaneous();
        BioSwissProtCcMiscellaneous getCcMiscellaneous(unsigned int);

        int getNumberOfCcPathWays();
        BioSwissProtCcPathWay getCcPathWay(unsigned int);

        int getNumberOfCcPharmaceuticals();
        BioSwissProtCcPharmaceutical getCcPharmaceutical(unsigned int);

        int getNumberOfCcPolymorphisms();
        BioSwissProtCcPolymorphism getCcPolymorphism(unsigned int);

        int getNumberOfCcPtms();
        BioSwissProtCcPtm getCcPtm(unsigned int);

        int getNumberOfCcRnaEditings();
        BioSwissProtCcRnaEditing getCcRnaEditing(unsigned int);

        int getNumberOfCcSimilarities();
        BioSwissProtCcSimilarity getCcSimilarity(unsigned int);

        int getNumberOfCcSubCellularLocations();
        BioSwissProtCcSubCellularLocation getCcSubCellularLocation(unsigned int);

        int getNumberOfCcSubUnits();
        BioSwissProtCcSubUnit getCcSubUnit(unsigned int);

        int getNumberOfCcTissueSpecificities();
        BioSwissProtCcTissueSpecificity getCcTissueSpecificity(unsigned int);

        void showCc(ostream & = cout);
//      friend ostream & operator << (ostream &,BioSwissProtCc &);
};



#endif