BioLenPos.h

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#ifndef BIOLENPOS_H
#define BIOLENPOS_H

#include <vector>
#include <string>

using namespace std;

class BioLenPos
{

friend bool operator >(const  BioLenPos& , const BioLenPos&);
friend bool operator <(const BioLenPos& , const BioLenPos&);
friend bool operator ==(const BioLenPos& , const BioLenPos&);

public:
          ~BioLenPos();
          long length;
          vector <long> st;
          vector <long> ed;
};




//#ifndef BIOPROTEINSTRUCTUREALIGNMENT_H
//#define BIOPROTEINSTRUCTUREALIGNMENT_H

class CalphaAtom {

friend bool operator >(const  CalphaAtom& , const CalphaAtom&);
friend bool operator <(const CalphaAtom& , const CalphaAtom&);
friend bool operator ==(const CalphaAtom& , const CalphaAtom&);

        public:
        string amino;
        short   nth;
        float   x,y,z;
        short   flag;
};


class coord {                       /* structure to hold X,Y coordinates */
friend bool operator >(const  coord& , const coord&);
friend bool operator <(const coord& , const coord&);
friend bool operator ==(const coord& , const coord&);
  
  public:
  int x;                                      /* location of OTU X in array */
  int y;                                      /* location of OTU Y in array */
};       
                                            /* size = 4 bytes */
class node {           /* structure to hold characteristics of one node */
  
  friend bool operator >(const  node& , const node&);
friend bool operator <(const node& , const node&);
friend bool operator ==(const node& , const node&);

  public: 
  string nodename;                                 /* name of node in tree */
  float   dist;                                         /* distance of node */
  string otuX;                                            /* name of OTU X */
  string otuY;                                            /* name of OTU Y */
};                                                  /* size = 68 bytes */

class branch {        /* structure to hold one branch (text line) of tree */
  friend bool operator >(const  branch& , const branch&);
friend bool operator <(const branch& , const branch&);
friend bool operator ==(const branch& , const branch&);

  public:
  string name;                                   /* name of current branch */
  string br;                                       /* text content of branch */
};                                                /* size = 96 bytes */


#endif