BioRestrictionEnzymeLibrary.h

Go to the documentation of this file.

#ifndef BIORESTRICTIONENZYMELIBRARY_H
#define BIORESTRICTIONENZYMELIBRARY_H

using namespace std;
#include <string>
#include <map>
#include <sstream>
#include "BioUtilities.h"

class BioRestrictionEnzymeLibrary
{
    static bool isInitialised_;
    string enzymeName_,enzymeType_,accessionNumber_,organismName_,prototype_;
    string restrictionSite_,methylationSite_;
static void initiA();
static void initiB();
static void initiC();
static void initiD();
static void initiE();
static void initiF();
static void initiG();
static void initiH();
static void initiI();
static void initiK();
static void initiL();
static void initiM();
static void initiN();
static void initiO();
static void initiP();
static void initiR();
static void initiS();
static void initiT();
static void initiU();
static void initiV();
static void initiX();
static void initiY();
static void initiZ();
  
friend bool operator >( const BioRestrictionEnzymeLibrary& , const BioRestrictionEnzymeLibrary&);
  friend bool operator <( const BioRestrictionEnzymeLibrary& , const BioRestrictionEnzymeLibrary&);
  friend bool operator ==( const BioRestrictionEnzymeLibrary& ,  const BioRestrictionEnzymeLibrary&);

    public :

    BioRestrictionEnzymeLibrary(){}
    BioRestrictionEnzymeLibrary(string id_,string et_,string ac_,string os_,
                                string pt_,string rs_,string ms_) :
        enzymeName_(id_),enzymeType_(et_),accessionNumber_(ac_),
        organismName_(os_),prototype_(pt_),restrictionSite_(rs_),
        methylationSite_(ms_){  }
   static map<const string , BioRestrictionEnzymeLibrary > RestrictionEnzyme;

   
   static void initialised();

   string getEnzymeName(){ return enzymeName_;}
   string getEnzymeType(){ return enzymeType_; }

   string getAccessionNumber()
     { return accessionNumber_.substr(0,accessionNumber_.length()-1);}

   string getOrganismName(){ return organismName_;}
   string getOrganismStrain();

   string getPrototype(){ return prototype_;}
   
   string getRestrictionSite(){ return restrictionSite_;}
   string getSequence();
   int getCutSite();
         
   string getMethylationSite(){return  methylationSite_;}
   int getMethylationBase();
   string getMethylationType();
 
   static unsigned int getNumberOfRestrictionEnzymes();
   static string getRestrictionEnzyme(unsigned int);  

//"SWRYKMBVHDN*"; AMBIGUITY CODE....................
        static vector < string > getUnAmbigousRestrictionEnzymes();
        static vector < string > getAmbigousRestrictionEnzymes();


static vector < string > getUniqueUnAmbigousRestrictionEnzymes();
static vector < string > getUniqueAmbigousRestrictionEnzymes();

static vector < string > getRestrictionEnzymes(const string& );

};
#endif