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BioInt
1.02.00
BioInt: An integrative biological object-oriented application framework and interpreter
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| BioChain() | BioChain | |
| BioChain(const string &) | BioChain | |
| BioChain(const string &, char) | BioChain | |
| BioChain(const unsigned long &atnumber, const string &atname, const string &resname, const char &ch, const long &resnumber, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &atrec) | BioChain | |
| BioChain(const char &chid, vector< BioResidue >) | BioChain | |
| chainId_ | BioChain | [protected] |
| eraseHydrogen() | BioChain | |
| findChainId(const char &) | BioChain | |
| getAverageBfactor() | BioChain | |
| getCentroid() | BioChain | |
| getCentroid(const string &) | BioChain | |
| getChainId() const | BioChain | |
| getChainSegment(const long &first, const long &last) | BioChain | |
| getChainSegment(const long &first, const long &last, const string &atname) | BioChain | |
| getDistance(const int &, const string &, const float &, const float &, const float &) | BioChain | |
| getDistance(const int &, const int &, const float &, const float &, const float &) | BioChain | |
| getDistance(const int &, const string &, const BioAtom &) | BioChain | |
| getDistance(const int &, const int &, const BioAtom &) | BioChain | |
| getLastResidue() | BioChain | |
| getLastResidueName() const | BioChain | |
| getLastResidueNumber() const | BioChain | |
| getNormalizedBfactors() | BioChain | |
| getNumberOfAtoms() const | BioChain | |
| getNumberOfResidues() const | BioChain | |
| getResidue(const int &) | BioChain | |
| getResidueIndex(const long &) const | BioChain | |
| getResidues() | BioChain | |
| operator<<(ostream &os, BioChain &ip) | BioChain | [friend] |
| pushResidue(const BioResidue &) | BioChain | |
| pushResidue(const unsigned long &atnumber, const string &atname, const string &resname, const long &resnum, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &) | BioChain | |
| residue | BioChain | [protected] |
| setChainId(const char &ch) | BioChain | |
| setNormalizedBfactors() | BioChain | |
| showChain(ostream &=cout) | BioChain | |
| showChainSegment(const long &, const long &, ostream &=cout) | BioChain | |
| showChainSegment(const long &, const long &, const string &atname, ostream &=cout) | BioChain | |
| showSphereAnAtom(const unsigned int &, const string &, ostream &=cout, const float &=2.3, const float &=3.2) | BioChain | |
| showSphereAnAtom(const unsigned int &, const unsigned int &, ostream &=cout, const float &=2.3, const float &=3.2) | BioChain | |
| ~BioChain() | BioChain | [virtual] |