BioProteinSubstitutionMatrix.h

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#ifndef BIOPROTEINSUBSTITUTIONMATRIX_H
#define BIOPROTEINSUBSTITUTIONMATRIX_H

#include <iostream>
#include <sstream>
#include <map>
#include "BioMatrix.h"


using namespace std;

class BioProteinSubstitutionMatrix
{
        static bool isInitialised;
        static string aminoAcidSeq_;
        static  map <const string ,string> ProteinSubstitutionMatrix;
        public:
                static void Initialize();
                static void Clear();
                static BioMatrix getSubstitutionMatrix(const string&);
       static unsigned int getNumberOfSubstitutionMatrices();
       static string getSubstitutionMatrixName(unsigned int);
       static int getSubstitutionValue(const string&, char, char);
                        static int getAminoAcidPosition(char);
        ~BioProteinSubstitutionMatrix();

};
#endif