BioFTQTranslExcept.h

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/****************************************************************************
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The BioBhasha : A Programming Language for Biologist
Version 1.0 (19th December 2001)
Dr. Prasad, B.V.L.S.
Contact: prasadbvls@helixgenomics.com
Version 1.1 (23th January 2003)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
*****************************************************************************/
#ifndef BIOFTQTRANSLEXCEPT_H
#define BIOFTQTRANSLEXCEPT_H


using namespace std;
#include <string>
#include <iostream>
#include <vector>


class BioFTQTranslExcept
{
  string translationException_;
  string aminoacid_;
        int finalBasePosition_;
        int initialBasePosition_;
        
        
public: 
        BioFTQTranslExcept(){}
        BioFTQTranslExcept(const string& bou_);

  void setBioFTQTranslExcept(const string& bou_);
        
        int getInitialBasePosition();
        int getFinalBasePosition();

        string getTranslExceptAminoAcid();

        bool findTranslExcept(const string& );
  void showTranslExcept(ostream& os = cout,string x= " ");
};


#endif