BioFTKSingleCds.h

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/****************************************************************************
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The BioBhasha : A Programming Language for Biologist
Version 1.0 (19th December 2001)
Dr. Prasad, B.V.L.S.
Contact: prasadbvls@helixgenomics.com
Version 1.1 (23th January 2003)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
*****************************************************************************/
#ifndef BIOFTKSINGLECDS_H 
#define BIOFTKSINGLECDS_H

using namespace std;

#include <string>
#include <fstream>
#include <iostream>
#include <vector>

#include "BioFTQAllele.h"
#include "BioFTQCitation.h"
#include "BioFTQCodon.h"
#include "BioFTQCodonStart.h"
#include "BioFTQDbXref.h"
#include "BioFTQECNumber.h"
#include "BioFTQEvidence.h"
#include "BioFTQException.h"
#include "BioFTQFunction.h"
#include "BioFTQGene.h"
#include "BioFTQLabel.h"
#include "BioFTQLocusTag.h"
#include "BioFTQMap.h"
#include "BioFTQNote.h"
#include "BioFTQNumber.h"
#include "BioFTQProduct.h"
#include "BioFTQProteinId.h"
#include "BioFTQStandardName.h"
#include "BioFTQTranslation.h"
#include "BioFTQTranslExcept.h"
#include "BioFTQTranslTable.h"
#include "BioFTQUsedIn.h"
#include "BioFTLBaseRange.h"

class BioFTKSingleCds : public BioFTQAllele,public BioFTQNote,
public BioFTQCitation,public BioFTQDbXref,public BioFTQEvidence,
public BioFTQFunction,public BioFTQGene,public BioFTQLabel,
public BioFTQLocusTag,public BioFTQUsedIn,public BioFTQMap,
public BioFTQStandardName,public BioFTQProduct,public BioFTQProteinId,
public BioFTQCodon,public BioFTQCodonStart,public BioFTQECNumber,
public BioFTQNumber,public BioFTQTranslation,public BioFTQTranslExcept,
public BioFTQTranslTable,public BioFTQException,public BioFTLBaseRange
{
        bool pseudo_;
                   friend bool operator >(const BioFTKSingleCds& , const BioFTKSingleCds&);
                   friend bool operator <(const BioFTKSingleCds& , const BioFTKSingleCds&);
                   friend bool operator ==(const BioFTKSingleCds& , const BioFTKSingleCds&);
public:
        BioFTKSingleCds();
        BioFTKSingleCds(const string& de_);

        bool findPseudo();

        void setFTKSingleCds(vector < string > );
        void showPseudo(ostream& os = cout,string x = " ");
        void showCds(ostream& os = cout,string x = " ");
    void showFeatureQualifiers(ostream & os = cout);
};

#endif