BioEmblSingleAs.h

Go to the documentation of this file.

/***************************************************************************
                          BioEmblSingleAs.h  -  description
                             -------------------
    begin                : Tue Jun 1 2004
    copyright            : (C) 2004 by Helix Team
    email                : parisodhana@helixgenomics.com
 ***************************************************************************/

/***************************************************************************
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU General Public License as published by  *
 *   the Free Software Foundation; either version 2 of the License, or     *
 *   (at your option) any later version.                                   *
 *                                                                         *
 ***************************************************************************/
#ifndef BIOEMBLSINGLEAS_H
#define BIOEMBLSINGLEAS_H

using namespace std;
#include <string>
#include <iostream>

class BioEmblSingleAs
{
friend bool operator <(const BioEmblSingleAs& , const BioEmblSingleAs&);
friend bool operator >(const BioEmblSingleAs& , const BioEmblSingleAs&);
friend bool operator ==(const BioEmblSingleAs& , const BioEmblSingleAs&);
  string tpaSpan_,primaryId_,primarySpan_;
  bool comp_;
public:
  BioEmblSingleAs();
  BioEmblSingleAs(const string&);

   void setSingleAs(const string& );

   string getTpaSpan();
   string getPrimaryIdentifier();
   string getPrimarySpan();
   bool findComplement();

   void showSingleAs(ostream & = cout);
};
#endif