BioProteinDisorderPrediction.h

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#ifndef BIOPROTEINDISORDERPREDICTION_H
#define BIOPROTEINDISORDERPREDICTION_H

#include "BioFasta.h"
#include "BioProteinSequence.h"
#include "BioSwissProt.h"

#include <stdlib.h>
#include <stdio.h>
#include <string.h>
#include <ctype.h>
#include <math.h>

#define AA "GAVLIFPSTCMWYNQDEKRH"
#define AAN 20
#define MSL 40000
#define ML 1000

#define DLC 1
#define DUC 100
#define DWS 10
#define DMin_Ene 0.3
#define DJOIN 45
#define DDEL 35


#define MAX(a,b) ((a)>(b)?(a):(b))
#define MIN(a,b) ((a)<(b)?(a):(b))

class BioProteinDisorderPrediction{
private:
  vector<double> disorder_; 
  string prot_seq;
  string seq_name;
public:
  BioProteinDisorderPrediction();
  BioProteinDisorderPrediction(BioFasta ,string);
  vector<int> getDisorderedResiduePositions();
  double getDisorder(int);
  void showDisorder(ostream& os = cout);
  void calculateDisorder( int, int, int, double, int, string, string, string);
};

#endif