BioDnaSubstitutionMatrix.h

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#ifndef BIODNASUBSTITUTIONMATRIX_H
#define BIODNASUBSTITUTIONMATRIX_H

#include <map>
#include <iostream>
#include <sstream>
#include "BioMatrix.h"

using namespace std;

class BioDnaSubstitutionMatrix
{
        static bool isInitialised;
  static        map <const string,string> DnaSubstitutionMatrix;
  static string nucleicAcidSeq;
 public:
                static void Initialize();
                static void Clear();
                static BioMatrix getSubstitutionMatrix(const string&);
    static unsigned int getNumberOfSubstitutionMatrices();
    static string getSubstitutionMatrixName(unsigned int);
    static int getSubstitutionValue(const string&, char, char);
                static int getNucleicAcidPosition(char);
        ~BioDnaSubstitutionMatrix();

};

#endif