BioMultipleFasta.h

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/****************************************************************************
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The BioBhasha : The Biologist's Programming Language 
Version 1.0 (19th December 2001)
Prasad, B.V.L.S.
Contact: burrashiva@yahoo.com
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
*****************************************************************************/
#ifndef BIOMULTIPLEFASTA_H
#define BIOMULTIPLEFASTA_H

#include <string>
#include "BioFasta.h"
#include <vector>
#include <algorithm>

class BioMultipleFasta
{
        vector<BioFasta>multipleFasta_;
   
        public:

  BioMultipleFasta();
        BioMultipleFasta(const string& );
        BioMultipleFasta(vector<BioFasta>);
        ~BioMultipleFasta();

  long getNumberOfEntries();
  BioFasta getEntry(unsigned long);

  bool find( unsigned long i, const string& );

  friend BioMultipleFasta operator+= (BioMultipleFasta& , BioFasta );
  friend BioMultipleFasta operator+( BioMultipleFasta , BioFasta& );
  friend BioMultipleFasta operator+( BioFasta&, BioFasta&);

  void pushEntry(BioFasta bf);
  void showInMultipleFasta(ostream & = cout);
  BioMultipleFasta getUniqueEntries();
  long getNumberOfUniqueEntries();
  void removeEntry(unsigned long x);
  void replaceEntry(unsigned long x, BioFasta bf);

};

#endif