BioInt  1.02.00
BioInt: An integrative biological object-oriented application framework and interpreter
BioSingleBlast Class Reference

#include <BioSingleBlast.h>

List of all members.

Public Member Functions

 BioSingleBlast (vector< string > oneBlast)
string getSequenceName ()
int getSequenceLength ()
int getAlignedFragmentLength ()
int getNumberOfIdentities ()
int getNumberOfGaps ()
int getNumberOfPositives ()
float getScore ()
double getEValue ()
void showAlignment (ostream &os=cout)
vector< string > getAlignment ()


bool operator< (const BioSingleBlast &x, const BioSingleBlast &y)
bool operator> (const BioSingleBlast &x, const BioSingleBlast &y)
bool operator== (const BioSingleBlast &x, const BioSingleBlast &y)

Constructor & Destructor Documentation

BioSingleBlast::BioSingleBlast ( vector< string >  oneBlast)

Member Function Documentation

vector<string> BioSingleBlast::getAlignment ( )
void BioSingleBlast::showAlignment ( ostream &  os = cout)

Friends And Related Function Documentation

bool operator< ( const BioSingleBlast x,
const BioSingleBlast y 
) [friend]
bool operator== ( const BioSingleBlast x,
const BioSingleBlast y 
) [friend]
bool operator> ( const BioSingleBlast x,
const BioSingleBlast y 
) [friend]

The documentation for this class was generated from the following file:
 All Classes Files Functions Variables Typedefs Enumerations Enumerator Friends Defines