BioInt  1.02.00
BioInt: An integrative biological object-oriented application framework and interpreter
BioMultipleSequenceAlignment Class Reference

#include <BioMultipleSequenceAlignment.h>

Inheritance diagram for BioMultipleSequenceAlignment:

List of all members.

Public Member Functions

 BioMultipleSequenceAlignment ()
 BioMultipleSequenceAlignment (BioMultipleFasta &)
 BioMultipleSequenceAlignment (BioMultipleGenBank &)
 BioMultipleSequenceAlignment (BioMultipleEmbl &)
 BioMultipleSequenceAlignment (BioMultipleSwissProt &)
void showAlignment (ostream &=cout)
string getAlignedSequence (int i)
vector< string > getAlignedSequences ()
string getAlignedSequenceName (int i)
BioFasta getAlignedSequenceInFasta (int i)
BioMultipleFasta getAlignedSequencesInMultipleFasta ()
vector< char > getColumn (int i)
BioMatrix getProfileMatrix (string s)
int getColumnScore (int col_index, string s)
vector< int > getColumnScores (string type)

Constructor & Destructor Documentation

Member Function Documentation

vector<char> BioMultipleSequenceAlignment::getColumn ( int  i)
int BioMultipleSequenceAlignment::getColumnScore ( int  col_index,
string  s 
vector<int> BioMultipleSequenceAlignment::getColumnScores ( string  type)
void BioMultipleSequenceAlignment::showAlignment ( ostream &  = cout)

The documentation for this class was generated from the following file:
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