BioUrl.h

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/****************************************************************************
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The BioBhasha : The Biologist's Programming Language 
Version 1.0 (19th December 2001)
Prasad, B.V.L.S.
Contact: burrashiva@yahoo.com
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
*****************************************************************************/
#ifndef BIOURL_H
#define BIOURL_H

#include "BioUtilities.h"
#include <iostream>
#include <fstream>
#include <string>
#include <sstream>
#include <vector>
#include "BioSocketStream.h"

using namespace std;

class BioUrl
{
string extractPathInfo( const string& fromUrl_);
string extractFileInfo( const string& fromUrl_);
string extractHostInfo( const string& fromUrl_);
void consume(istream& is, string word);

public:

static int getEmblFile(const string& pdbid, ostream& toBeStoredAs);
static int getSwissProtFile(const string& pdbid, ostream& toBeStoredAs);

static int getPdbFile(const string& pdbid, ostream& toBeStoredAs);

static int getGenPeptFile(const string& gi, ostream& toBeStoredAs);
static int getGenBankFile(const string& gi, ostream& toBeStoredAs);
static int getPubMedFile(const string& pmid, ostream& toBeStoredAs);

static string getPdbIdsWithChids(string pdbid);
static string getProteinIds(string pdbch);

static string getPubmedIds(string proteinIds);

//int getReferenceAbstracts(string pdbId, ostream& os);

static string getDbLastUpdate(const string& db_);

bool getFileByFtp(const string& fromUrl_);

static int getGeneId(const string& geneSymbol);
static vector<string> getGeneSynonyms(int geneid);
static string getGeneAccession(int geneid);


};





#endif