BioInt  1.02.00
BioInt: An integrative biological object-oriented application framework and interpreter
BioAminoAcid Class Reference

#include <BioAminoAcid.h>

List of all members.

Public Member Functions

 ~BioAminoAcid ()
 BioAminoAcid (const string &aan, const int &sn, const char &slc, const string &tlc, const float &mw, const float &dcv, const float &aca, const float &hpi, const float &hpho, const float &hphi, const float &hcfp, const float &scfp, const float &tcfp, const float &pr0, const float &pr1, const float &pr2, const float &pr3, const float &pkc, const float &pkn, const float &pks, const int &nc, const int &nh, const int &nn, const int &no, const int &ns, const float &gxg, const float &avaca)
char getSingleLetterCode () const
string getThreeLetterCode () const
int getSerialNumber () const
float getMolecularWeight () const
string getAminoAcidName () const
float getMolecularVolume () const
float getAccessibleSurfaceArea () const
float getHydropathyIndex () const
float getHydrophobicity () const
float getHydrophilicity () const
float getCFHelixPropensity () const
float getCFSheetPropensity () const
float getCFTurnPropensity () const
float getCFTurnPositionProbability (int position)
float getpKaCarboxylate () const
float getpKaAmine () const
float getpKaSideChain () const
int getNumberOfCarbons () const
int getNumberOfHydrogens () const
int getNumberOfNitrogens () const
int getNumberOfOxygens () const
int getNumberOfSulphurs () const
float getGXGSurfaceArea () const
float getAverageAccessibleArea () const
float getAverageBuriedArea () const
float getMeanFractionalAreaLoss () const

Friends

bool operator> (const BioAminoAcid &, const BioAminoAcid &)
bool operator< (const BioAminoAcid &, const BioAminoAcid &)
bool operator== (const BioAminoAcid &, const BioAminoAcid &)

Constructor & Destructor Documentation

BioAminoAcid::BioAminoAcid ( const string &  aan,
const int &  sn,
const char &  slc,
const string &  tlc,
const float &  mw,
const float &  dcv,
const float &  aca,
const float &  hpi,
const float &  hpho,
const float &  hphi,
const float &  hcfp,
const float &  scfp,
const float &  tcfp,
const float &  pr0,
const float &  pr1,
const float &  pr2,
const float &  pr3,
const float &  pkc,
const float &  pkn,
const float &  pks,
const int &  nc,
const int &  nh,
const int &  nn,
const int &  no,
const int &  ns,
const float &  gxg,
const float &  avaca 
) [inline]

Member Function Documentation

float BioAminoAcid::getAccessibleSurfaceArea ( ) const [inline]
string BioAminoAcid::getAminoAcidName ( ) const [inline]
float BioAminoAcid::getAverageAccessibleArea ( ) const [inline]
float BioAminoAcid::getAverageBuriedArea ( ) const [inline]
float BioAminoAcid::getCFHelixPropensity ( ) const [inline]
float BioAminoAcid::getCFSheetPropensity ( ) const [inline]
float BioAminoAcid::getCFTurnPropensity ( ) const [inline]
float BioAminoAcid::getGXGSurfaceArea ( ) const [inline]
float BioAminoAcid::getHydropathyIndex ( ) const [inline]
float BioAminoAcid::getHydrophilicity ( ) const [inline]
float BioAminoAcid::getHydrophobicity ( ) const [inline]
float BioAminoAcid::getMeanFractionalAreaLoss ( ) const [inline]
float BioAminoAcid::getMolecularVolume ( ) const [inline]
float BioAminoAcid::getMolecularWeight ( ) const [inline]
int BioAminoAcid::getNumberOfCarbons ( ) const [inline]
int BioAminoAcid::getNumberOfHydrogens ( ) const [inline]
int BioAminoAcid::getNumberOfNitrogens ( ) const [inline]
int BioAminoAcid::getNumberOfOxygens ( ) const [inline]
int BioAminoAcid::getNumberOfSulphurs ( ) const [inline]
float BioAminoAcid::getpKaAmine ( ) const [inline]
float BioAminoAcid::getpKaCarboxylate ( ) const [inline]
float BioAminoAcid::getpKaSideChain ( ) const [inline]
int BioAminoAcid::getSerialNumber ( ) const [inline]
char BioAminoAcid::getSingleLetterCode ( ) const [inline]
string BioAminoAcid::getThreeLetterCode ( ) const [inline]

Friends And Related Function Documentation

bool operator< ( const BioAminoAcid ,
const BioAminoAcid  
) [friend]
bool operator== ( const BioAminoAcid ,
const BioAminoAcid  
) [friend]
bool operator> ( const BioAminoAcid ,
const BioAminoAcid  
) [friend]

The documentation for this class was generated from the following file:
 All Classes Files Functions Variables Typedefs Enumerations Enumerator Friends Defines