BioInt  1.02.00
BioInt: An integrative biological object-oriented application framework and interpreter
BioProteinChain Member List
This is the complete list of members for BioProteinChain, including all inherited members.
BioChain()BioChain
BioChain(const string &)BioChain
BioChain(const string &, char)BioChain
BioChain(const unsigned long &atnumber, const string &atname, const string &resname, const char &ch, const long &resnumber, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &atrec)BioChain
BioChain(const char &chid, vector< BioResidue >)BioChain
BioProteinChain()BioProteinChain
BioProteinChain(const string &)BioProteinChain
BioProteinChain(const string &, const char &)BioProteinChain
BioProteinChain(const char &chid, const vector< BioResidue > &)BioProteinChain
BioProteinChain(const long &atnumber, const string &atname, const string &resname, const char &ch, const long &resnumber, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &atrec)BioProteinChain
chainId_BioChain [protected]
eraseHydrogen()BioProteinChain
findChainId(const char &)BioChain
getAverageBfactor()BioChain
getCentroid()BioChain
getCentroid(const string &)BioChain
getChainId() const BioChain
getChainSegment(const long &first, const long &last)BioProteinChain
getChainSegment(const long &first, const long &last, const string &atname)BioProteinChain
getDistance(const int &, const string &, const float &, const float &, const float &)BioChain
getDistance(const int &, const int &, const float &, const float &, const float &)BioChain
getDistance(const int &, const string &, const BioAtom &)BioChain
getDistance(const int &, const int &, const BioAtom &)BioChain
getLastResidue()BioChain
getLastResidueName() const BioChain
getLastResidueNumber() const BioChain
getNormalizedBfactors()BioChain
getNumberOfAtoms() const BioChain
getNumberOfResidues() const BioChain
getResidue(const int &)BioChain
getResidueIndex(const long &) const BioChain
getResidues()BioChain
getRotatedProteinChain(const float **arr)BioProteinChain
getSequence()BioProteinChain
getSequenceLength()BioProteinChain
getSequenceSegment(const long &, const long &)BioProteinChain
operator+(BioProteinChain &)BioProteinChain
operator+(BioResidue &, BioResidue &)BioProteinChain [friend]
operator+(BioResidue &)BioProteinChain
operator<(const BioProteinChain &, const BioProteinChain &)BioProteinChain [friend]
operator<<(ostream &os, BioProteinChain &ip)BioProteinChain [friend]
BioChain::operator<<(ostream &os, BioChain &ip)BioChain [friend]
operator==(const BioProteinChain &, const BioProteinChain &)BioProteinChain [friend]
operator>(const BioProteinChain &, const BioProteinChain &)BioProteinChain [friend]
pushResidue(const BioResidue &)BioChain
pushResidue(const unsigned long &atnumber, const string &atname, const string &resname, const long &resnum, const float &x1, const float &y1, const float &z1, const float &oc1, const float &bf1, const string &)BioChain
residueBioChain [protected]
setChainId(const char &ch)BioChain
setNormalizedBfactors()BioChain
setProteinDisplayArea(double startx=80, double starty=250, double size=450)BioProteinChain
setRamaPlotColorSpec(float=96.0, float=128.99, float=170.9, float=249, float=219, float=31.98, float=0, float=0, float=0)BioProteinChain
showBackBone(BioPostScript &ps, double width=1, double r=255, double g=0, double b=0)BioProteinChain
showCAlphaTrace(BioPostScript &bioPostScriptObject, double width=1, double r=0, double g=0, double b=0)BioProteinChain
showChain(ostream &=cout)BioChain
showChainSegment(const long &, const long &, ostream &=cout)BioChain
showChainSegment(const long &, const long &, const string &atname, ostream &=cout)BioChain
showChiAngles(ostream &=cout)BioProteinChain
showInFasta(ostream &os=cout)BioProteinChain
showPhiPsiOmega(ostream &=cout)BioProteinChain
showProteinChain(BioPostScript &obj, double width=1, double r=0, double g=0, double b=0)BioProteinChain
showRamaChandranPlot(BioPostScript &bioPostScriptObject, int type=FILLED_TRIANGLE, int pointWidth=3.2, int startX=80, int startY=250, int width=450, int height=450)BioProteinChain
showSphereAnAtom(const unsigned int &, const string &, ostream &=cout, const float &=2.3, const float &=3.2)BioChain
showSphereAnAtom(const unsigned int &, const unsigned int &, ostream &=cout, const float &=2.3, const float &=3.2)BioChain
~BioChain()BioChain [virtual]
~BioProteinChain()BioProteinChain [inline]
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